miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 221250 0.65 0.960664
Target:  5'- gGCCGgCCgcggCGGaagUCGGGGgacgcggggcgcguGGAGGGGGGg -3'
miRNA:   3'- -CGGCaGGa---GCU---AGCCCU--------------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 226196 0.67 0.937971
Target:  5'- gGUCGaCCUCcGUCGGGGacGGGAGGAc -3'
miRNA:   3'- -CGGCaGGAGcUAGCCCUccUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 183496 0.67 0.933272
Target:  5'- gGCCG-CCUaCGGcCGcGAGGggGAGGc -3'
miRNA:   3'- -CGGCaGGA-GCUaGCcCUCCuuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 226532 0.99 0.021652
Target:  5'- cGCCGUCCUCGAUC-GGAGGAAGAGGAa -3'
miRNA:   3'- -CGGCAGGAGCUAGcCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 193616 0.66 0.958243
Target:  5'- cGCgGg----GAUgGGGGGGAAGAGGAu -3'
miRNA:   3'- -CGgCaggagCUAgCCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 170647 0.66 0.957175
Target:  5'- cGCCGgcgCCUCGccugcgguuuccucGUCGGGugagcguGGAGcAGGAg -3'
miRNA:   3'- -CGGCa--GGAGC--------------UAGCCCu------CCUUcUCCU- -5'
8944 5' -56.7 NC_002512.2 + 221370 0.66 0.954236
Target:  5'- uGUCGgugguguguccucUCCUCGggCGGGGcgcGGgcGGGGAg -3'
miRNA:   3'- -CGGC-------------AGGAGCuaGCCCU---CCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 195049 0.66 0.95077
Target:  5'- cGCCGcggCCcgCGggCGGGAGGGucguccggucGGGGAc -3'
miRNA:   3'- -CGGCa--GGa-GCuaGCCCUCCUu---------CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 151057 0.66 0.946718
Target:  5'- cGCgGUCCUCGA-CGGcGGGGGAuGcGGu -3'
miRNA:   3'- -CGgCAGGAGCUaGCC-CUCCUU-CuCCu -5'
8944 5' -56.7 NC_002512.2 + 112167 0.66 0.941131
Target:  5'- aGCCGgCgCUCGAgcccgcacgcgCGgagcauggccacccGGAGGAAGAGGAu -3'
miRNA:   3'- -CGGCaG-GAGCUa----------GC--------------CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 220167 0.66 0.946718
Target:  5'- cGUCGUgCUCugcGUCGGGAGGAGGuuccGcGAa -3'
miRNA:   3'- -CGGCAgGAGc--UAGCCCUCCUUCu---C-CU- -5'
8944 5' -56.7 NC_002512.2 + 200338 0.66 0.946718
Target:  5'- cGgCGUCCUCcugucggcgGA-CGGGGGGAcggggcGGGGGGu -3'
miRNA:   3'- -CgGCAGGAG---------CUaGCCCUCCU------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 223817 0.66 0.959639
Target:  5'- cGCCGggacgacgacggcgCgUCGGagGGGaAGGAGGAGGc -3'
miRNA:   3'- -CGGCa-------------GgAGCUagCCC-UCCUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 99053 0.66 0.942452
Target:  5'- cGCCGguaCUCGAccgCGGGguuGGGGuggcuGAGGAu -3'
miRNA:   3'- -CGGCag-GAGCUa--GCCC---UCCUu----CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 189232 0.66 0.958243
Target:  5'- uCCGUCCgUCGccGUCGcGGAcgucaccgucgGGGAGAGGu -3'
miRNA:   3'- cGGCAGG-AGC--UAGC-CCU-----------CCUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 214444 0.66 0.946718
Target:  5'- cCCGUCUaCG-UCGGcGAGGAcGAGGc -3'
miRNA:   3'- cGGCAGGaGCuAGCC-CUCCUuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 150046 0.66 0.942452
Target:  5'- gGCCGgggaCgaCGGggCGGGAGGggG-GGAc -3'
miRNA:   3'- -CGGCa---GgaGCUa-GCCCUCCuuCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 145779 0.67 0.937971
Target:  5'- cGCUGUggCCg----CGGGAGGAGGuGGAg -3'
miRNA:   3'- -CGGCA--GGagcuaGCCCUCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 149515 0.66 0.958243
Target:  5'- gGCCGcggCCg-GAgCGGGccggccAGGAGGAGGAc -3'
miRNA:   3'- -CGGCa--GGagCUaGCCC------UCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 96184 0.66 0.954611
Target:  5'- aCCGUCCggUGGUcCGGGAGGcggccgcGAGGu -3'
miRNA:   3'- cGGCAGGa-GCUA-GCCCUCCuu-----CUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.