Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8944 | 5' | -56.7 | NC_002512.2 | + | 15 | 0.66 | 0.958243 |
Target: 5'- gGCCgGUCCUCcuccccCGGGggcgucuugcaAGGggGGGGGg -3' miRNA: 3'- -CGG-CAGGAGcua---GCCC-----------UCCuuCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 3971 | 0.74 | 0.606838 |
Target: 5'- cGUCGUCCccUCGGucgacgcgcuccUCGGGAGGcGGGGGGc -3' miRNA: 3'- -CGGCAGG--AGCU------------AGCCCUCCuUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 4497 | 0.75 | 0.54589 |
Target: 5'- cGCCGUCCcCGAagaggauggacgcgaGGGuGGAGGAGGAg -3' miRNA: 3'- -CGGCAGGaGCUag-------------CCCuCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 5094 | 0.66 | 0.954611 |
Target: 5'- cGCCGgCgUCGGcgCGGGcGGGAGAGa- -3' miRNA: 3'- -CGGCaGgAGCUa-GCCCuCCUUCUCcu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 10432 | 0.66 | 0.958243 |
Target: 5'- -gCGUCgUCGccGUCGGGcacGGGGgcgcGGAGGAg -3' miRNA: 3'- cgGCAGgAGC--UAGCCC---UCCU----UCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 12073 | 0.66 | 0.946718 |
Target: 5'- cGCCGUCgaCGAUCGGGAcGgcGAc-- -3' miRNA: 3'- -CGGCAGgaGCUAGCCCUcCuuCUccu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 18664 | 0.68 | 0.887851 |
Target: 5'- aGUCGUaguaCUCG-UCGGaGAGGAAGAGc- -3' miRNA: 3'- -CGGCAg---GAGCuAGCC-CUCCUUCUCcu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 21229 | 0.71 | 0.778494 |
Target: 5'- cGCCGcCCggggCGGagaCGGGGGcGGAGAGGGc -3' miRNA: 3'- -CGGCaGGa---GCUa--GCCCUC-CUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 21446 | 0.66 | 0.95077 |
Target: 5'- -aCGUCCgacUCGAUCGGGGGccGGcgccGGGAg -3' miRNA: 3'- cgGCAGG---AGCUAGCCCUCcuUC----UCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 29251 | 0.72 | 0.684963 |
Target: 5'- uCCGUCCUcCGAcgGGGAcGAGGAGGAc -3' miRNA: 3'- cGGCAGGA-GCUagCCCUcCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 31649 | 0.69 | 0.850441 |
Target: 5'- gGCCGUCCcggacggcgCGGgcgCGGccgugguggcggacGGGGAGGAGGAc -3' miRNA: 3'- -CGGCAGGa--------GCUa--GCC--------------CUCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 38245 | 0.69 | 0.837326 |
Target: 5'- cGCCGUCCUggcucCGAUCGGGc----GAGGGa -3' miRNA: 3'- -CGGCAGGA-----GCUAGCCCuccuuCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 47721 | 0.76 | 0.510993 |
Target: 5'- cGCCG-CCUCG--CGGGAGGAGGGcucGGAa -3' miRNA: 3'- -CGGCaGGAGCuaGCCCUCCUUCU---CCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 54414 | 0.7 | 0.787319 |
Target: 5'- -aCGUCCUgGAcggccugCuGGGGGAAGAGGAc -3' miRNA: 3'- cgGCAGGAgCUa------GcCCUCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 59289 | 0.7 | 0.812998 |
Target: 5'- cGUCGUgCUCGAcggacUCGGGucGGGAcacggcgacGGAGGAg -3' miRNA: 3'- -CGGCAgGAGCU-----AGCCC--UCCU---------UCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 63104 | 0.7 | 0.812998 |
Target: 5'- -aCGUCCUCGucCGGGAcgGGAGGAGa- -3' miRNA: 3'- cgGCAGGAGCuaGCCCU--CCUUCUCcu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 63129 | 0.7 | 0.812998 |
Target: 5'- aGCCGUCCaCGAgcaGGGuGGAguaacAGAGGu -3' miRNA: 3'- -CGGCAGGaGCUag-CCCuCCU-----UCUCCu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 63447 | 0.68 | 0.874381 |
Target: 5'- cGCCGUcgcCCcCGGaggaCGGcGGGGAAGAGGGc -3' miRNA: 3'- -CGGCA---GGaGCUa---GCC-CUCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 64105 | 0.68 | 0.883896 |
Target: 5'- -aCGUCCUCGA-CGGGcgcgcaggagccgauGGuGAAGAGGu -3' miRNA: 3'- cgGCAGGAGCUaGCCC---------------UC-CUUCUCCu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 65734 | 0.7 | 0.821267 |
Target: 5'- gGgUGUCCUCGAUgaucUGGGu-GAAGAGGAa -3' miRNA: 3'- -CgGCAGGAGCUA----GCCCucCUUCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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