miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 15 0.66 0.958243
Target:  5'- gGCCgGUCCUCcuccccCGGGggcgucuugcaAGGggGGGGGg -3'
miRNA:   3'- -CGG-CAGGAGcua---GCCC-----------UCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 3971 0.74 0.606838
Target:  5'- cGUCGUCCccUCGGucgacgcgcuccUCGGGAGGcGGGGGGc -3'
miRNA:   3'- -CGGCAGG--AGCU------------AGCCCUCCuUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 4497 0.75 0.54589
Target:  5'- cGCCGUCCcCGAagaggauggacgcgaGGGuGGAGGAGGAg -3'
miRNA:   3'- -CGGCAGGaGCUag-------------CCCuCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 5094 0.66 0.954611
Target:  5'- cGCCGgCgUCGGcgCGGGcGGGAGAGa- -3'
miRNA:   3'- -CGGCaGgAGCUa-GCCCuCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 10432 0.66 0.958243
Target:  5'- -gCGUCgUCGccGUCGGGcacGGGGgcgcGGAGGAg -3'
miRNA:   3'- cgGCAGgAGC--UAGCCC---UCCU----UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 12073 0.66 0.946718
Target:  5'- cGCCGUCgaCGAUCGGGAcGgcGAc-- -3'
miRNA:   3'- -CGGCAGgaGCUAGCCCUcCuuCUccu -5'
8944 5' -56.7 NC_002512.2 + 18664 0.68 0.887851
Target:  5'- aGUCGUaguaCUCG-UCGGaGAGGAAGAGc- -3'
miRNA:   3'- -CGGCAg---GAGCuAGCC-CUCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 21229 0.71 0.778494
Target:  5'- cGCCGcCCggggCGGagaCGGGGGcGGAGAGGGc -3'
miRNA:   3'- -CGGCaGGa---GCUa--GCCCUC-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 21446 0.66 0.95077
Target:  5'- -aCGUCCgacUCGAUCGGGGGccGGcgccGGGAg -3'
miRNA:   3'- cgGCAGG---AGCUAGCCCUCcuUC----UCCU- -5'
8944 5' -56.7 NC_002512.2 + 29251 0.72 0.684963
Target:  5'- uCCGUCCUcCGAcgGGGAcGAGGAGGAc -3'
miRNA:   3'- cGGCAGGA-GCUagCCCUcCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 31649 0.69 0.850441
Target:  5'- gGCCGUCCcggacggcgCGGgcgCGGccgugguggcggacGGGGAGGAGGAc -3'
miRNA:   3'- -CGGCAGGa--------GCUa--GCC--------------CUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 38245 0.69 0.837326
Target:  5'- cGCCGUCCUggcucCGAUCGGGc----GAGGGa -3'
miRNA:   3'- -CGGCAGGA-----GCUAGCCCuccuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 47721 0.76 0.510993
Target:  5'- cGCCG-CCUCG--CGGGAGGAGGGcucGGAa -3'
miRNA:   3'- -CGGCaGGAGCuaGCCCUCCUUCU---CCU- -5'
8944 5' -56.7 NC_002512.2 + 54414 0.7 0.787319
Target:  5'- -aCGUCCUgGAcggccugCuGGGGGAAGAGGAc -3'
miRNA:   3'- cgGCAGGAgCUa------GcCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 59289 0.7 0.812998
Target:  5'- cGUCGUgCUCGAcggacUCGGGucGGGAcacggcgacGGAGGAg -3'
miRNA:   3'- -CGGCAgGAGCU-----AGCCC--UCCU---------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 63104 0.7 0.812998
Target:  5'- -aCGUCCUCGucCGGGAcgGGAGGAGa- -3'
miRNA:   3'- cgGCAGGAGCuaGCCCU--CCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 63129 0.7 0.812998
Target:  5'- aGCCGUCCaCGAgcaGGGuGGAguaacAGAGGu -3'
miRNA:   3'- -CGGCAGGaGCUag-CCCuCCU-----UCUCCu -5'
8944 5' -56.7 NC_002512.2 + 63447 0.68 0.874381
Target:  5'- cGCCGUcgcCCcCGGaggaCGGcGGGGAAGAGGGc -3'
miRNA:   3'- -CGGCA---GGaGCUa---GCC-CUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 64105 0.68 0.883896
Target:  5'- -aCGUCCUCGA-CGGGcgcgcaggagccgauGGuGAAGAGGu -3'
miRNA:   3'- cgGCAGGAGCUaGCCC---------------UC-CUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 65734 0.7 0.821267
Target:  5'- gGgUGUCCUCGAUgaucUGGGu-GAAGAGGAa -3'
miRNA:   3'- -CgGCAGGAGCUA----GCCCucCUUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.