miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 229419 0.66 0.958243
Target:  5'- gGCCgGUCCUCcuccccCGGGggcgucuugcaAGGggGGGGGg -3'
miRNA:   3'- -CGG-CAGGAGcua---GCCC-----------UCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 228087 0.72 0.704243
Target:  5'- gGCUG-CacaCGGUCGGGAGcGAGGAGGGc -3'
miRNA:   3'- -CGGCaGga-GCUAGCCCUC-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 227527 0.74 0.577637
Target:  5'- --aGUCCggcggCGGaCGGGGGGAGGAGGGc -3'
miRNA:   3'- cggCAGGa----GCUaGCCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 226532 0.99 0.021652
Target:  5'- cGCCGUCCUCGAUC-GGAGGAAGAGGAa -3'
miRNA:   3'- -CGGCAGGAGCUAGcCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 226448 0.71 0.779382
Target:  5'- cGCCGUCaccgaccagccccgCGAggCGGGAGGAGGccGGGGc -3'
miRNA:   3'- -CGGCAGga------------GCUa-GCCCUCCUUC--UCCU- -5'
8944 5' -56.7 NC_002512.2 + 226230 0.68 0.881218
Target:  5'- aCCGUCggccgCGAgggggCcGGAGGAGGAGGAg -3'
miRNA:   3'- cGGCAGga---GCUa----GcCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 226196 0.67 0.937971
Target:  5'- gGUCGaCCUCcGUCGGGGacGGGAGGAc -3'
miRNA:   3'- -CGGCaGGAGcUAGCCCUccUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 223817 0.66 0.959639
Target:  5'- cGCCGggacgacgacggcgCgUCGGagGGGaAGGAGGAGGc -3'
miRNA:   3'- -CGGCa-------------GgAGCUagCCC-UCCUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 223309 0.69 0.852702
Target:  5'- cGCCGgucgacaCCgugaaCGGUCGGGAGGAc-GGGAc -3'
miRNA:   3'- -CGGCa------GGa----GCUAGCCCUCCUucUCCU- -5'
8944 5' -56.7 NC_002512.2 + 221370 0.66 0.954236
Target:  5'- uGUCGgugguguguccucUCCUCGggCGGGGcgcGGgcGGGGAg -3'
miRNA:   3'- -CGGC-------------AGGAGCuaGCCCU---CCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 221335 0.67 0.917863
Target:  5'- uGCCuUCgCUCGAccgCGGGAGaagauGGAGGAg -3'
miRNA:   3'- -CGGcAG-GAGCUa--GCCCUCcu---UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 221250 0.65 0.960664
Target:  5'- gGCCGgCCgcggCGGaagUCGGGGgacgcggggcgcguGGAGGGGGGg -3'
miRNA:   3'- -CGGCaGGa---GCU---AGCCCU--------------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 220167 0.66 0.946718
Target:  5'- cGUCGUgCUCugcGUCGGGAGGAGGuuccGcGAa -3'
miRNA:   3'- -CGGCAgGAGc--UAGCCCUCCUUCu---C-CU- -5'
8944 5' -56.7 NC_002512.2 + 219934 0.67 0.91229
Target:  5'- uCCGUCgaCGcgCGGG-GGAGGGuGGAu -3'
miRNA:   3'- cGGCAGgaGCuaGCCCuCCUUCU-CCU- -5'
8944 5' -56.7 NC_002512.2 + 214444 0.66 0.946718
Target:  5'- cCCGUCUaCG-UCGGcGAGGAcGAGGc -3'
miRNA:   3'- cGGCAGGaGCuAGCC-CUCCUuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 208849 0.74 0.591234
Target:  5'- cGCCGUUCcuguuuuucgcuuaaUCGGcacUCGGGGGGAcgGGAGGGg -3'
miRNA:   3'- -CGGCAGG---------------AGCU---AGCCCUCCU--UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 205300 0.72 0.704243
Target:  5'- aGCgGUCCccgcgUCGAcggacCGGGAGGGagGGAGGAg -3'
miRNA:   3'- -CGgCAGG-----AGCUa----GCCCUCCU--UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 201755 0.74 0.577637
Target:  5'- cGCCGaUCC-CGGgggaCGGGAGGGAcGAGGGu -3'
miRNA:   3'- -CGGC-AGGaGCUa---GCCCUCCUU-CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 200390 0.68 0.90591
Target:  5'- gGCUGcaggaUCUCGGcCGGGAGGGagcagacGGAGGAg -3'
miRNA:   3'- -CGGCa----GGAGCUaGCCCUCCU-------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 200338 0.66 0.946718
Target:  5'- cGgCGUCCUCcugucggcgGA-CGGGGGGAcggggcGGGGGGu -3'
miRNA:   3'- -CgGCAGGAG---------CUaGCCCUCCU------UCUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.