miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 226532 0.99 0.021652
Target:  5'- cGCCGUCCUCGAUC-GGAGGAAGAGGAa -3'
miRNA:   3'- -CGGCAGGAGCUAGcCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 147287 0.78 0.389109
Target:  5'- cGCCGcgCgUCGuuccCGGGGGGGAGAGGAa -3'
miRNA:   3'- -CGGCa-GgAGCua--GCCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 103452 0.77 0.430496
Target:  5'- cGCCGUCgC-CGGcCGGGcGGGAGGAGGAg -3'
miRNA:   3'- -CGGCAG-GaGCUaGCCC-UCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 135810 0.77 0.456534
Target:  5'- cGCCGcCgUCG--CGGGGGGAGGAGGGu -3'
miRNA:   3'- -CGGCaGgAGCuaGCCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 119448 0.76 0.483395
Target:  5'- uGCgCGUCCUCcgccucuaGAUCGGGcGGAAGuGGAa -3'
miRNA:   3'- -CG-GCAGGAG--------CUAGCCCuCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 139270 0.76 0.483395
Target:  5'- cGCCGcCCggCGcgCGGGGGcGAAGGGGGg -3'
miRNA:   3'- -CGGCaGGa-GCuaGCCCUC-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 47721 0.76 0.510993
Target:  5'- cGCCG-CCUCG--CGGGAGGAGGGcucGGAa -3'
miRNA:   3'- -CGGCaGGAGCuaGCCCUCCUUCU---CCU- -5'
8944 5' -56.7 NC_002512.2 + 4497 0.75 0.54589
Target:  5'- cGCCGUCCcCGAagaggauggacgcgaGGGuGGAGGAGGAg -3'
miRNA:   3'- -CGGCAGGaGCUag-------------CCCuCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 148415 0.75 0.548755
Target:  5'- uGCCGUgCCUCcugCGGGAccgccGGggGAGGAc -3'
miRNA:   3'- -CGGCA-GGAGcuaGCCCU-----CCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 100254 0.75 0.558337
Target:  5'- -gCGUCCUCGGagagCGGGAGG-AGAcGGAg -3'
miRNA:   3'- cgGCAGGAGCUa---GCCCUCCuUCU-CCU- -5'
8944 5' -56.7 NC_002512.2 + 227527 0.74 0.577637
Target:  5'- --aGUCCggcggCGGaCGGGGGGAGGAGGGc -3'
miRNA:   3'- cggCAGGa----GCUaGCCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 201755 0.74 0.577637
Target:  5'- cGCCGaUCC-CGGgggaCGGGAGGGAcGAGGGu -3'
miRNA:   3'- -CGGC-AGGaGCUa---GCCCUCCUU-CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 98360 0.74 0.587343
Target:  5'- uCCG-CCUCGucucccuccggcGUCGuGGGGGAAGAGGGg -3'
miRNA:   3'- cGGCaGGAGC------------UAGC-CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 208849 0.74 0.591234
Target:  5'- cGCCGUUCcuguuuuucgcuuaaUCGGcacUCGGGGGGAcgGGAGGGg -3'
miRNA:   3'- -CGGCAGG---------------AGCU---AGCCCUCCU--UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 3971 0.74 0.606838
Target:  5'- cGUCGUCCccUCGGucgacgcgcuccUCGGGAGGcGGGGGGc -3'
miRNA:   3'- -CGGCAGG--AGCU------------AGCCCUCCuUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 133809 0.74 0.606838
Target:  5'- gGUCGcgCCg-GGUgCGGGGGGAAGAGGAg -3'
miRNA:   3'- -CGGCa-GGagCUA-GCCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 92651 0.73 0.626402
Target:  5'- cGCCGgugUCCUCG-UCGGGAccgGGGAGAGa- -3'
miRNA:   3'- -CGGC---AGGAGCuAGCCCU---CCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 150166 0.73 0.64011
Target:  5'- cCCGUCCUCGcUCucccugccgggccuGGGGGGAGAGGGa -3'
miRNA:   3'- cGGCAGGAGCuAGc-------------CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 131014 0.73 0.652829
Target:  5'- uUCGUCUUCGAcgcgcucgagggcgUCGGGGccgcGGggGAGGAc -3'
miRNA:   3'- cGGCAGGAGCU--------------AGCCCU----CCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 29251 0.72 0.684963
Target:  5'- uCCGUCCUcCGAcgGGGAcGAGGAGGAc -3'
miRNA:   3'- cGGCAGGA-GCUagCCCUcCUUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.