miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 221250 0.65 0.960664
Target:  5'- gGCCGgCCgcggCGGaagUCGGGGgacgcggggcgcguGGAGGGGGGg -3'
miRNA:   3'- -CGGCaGGa---GCU---AGCCCU--------------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 170647 0.66 0.957175
Target:  5'- cGCCGgcgCCUCGccugcgguuuccucGUCGGGugagcguGGAGcAGGAg -3'
miRNA:   3'- -CGGCa--GGAGC--------------UAGCCCu------CCUUcUCCU- -5'
8944 5' -56.7 NC_002512.2 + 75419 0.66 0.954611
Target:  5'- uGCC-UCCUCGAgggCGGGAcguccGGAucGGGGc -3'
miRNA:   3'- -CGGcAGGAGCUa--GCCCU-----CCUu-CUCCu -5'
8944 5' -56.7 NC_002512.2 + 21446 0.66 0.95077
Target:  5'- -aCGUCCgacUCGAUCGGGGGccGGcgccGGGAg -3'
miRNA:   3'- cgGCAGG---AGCUAGCCCUCcuUC----UCCU- -5'
8944 5' -56.7 NC_002512.2 + 133219 0.66 0.942452
Target:  5'- cGUCGUCCgcccagCGAggaCGGGAGGgcGGcGGc -3'
miRNA:   3'- -CGGCAGGa-----GCUa--GCCCUCCuuCU-CCu -5'
8944 5' -56.7 NC_002512.2 + 131972 0.66 0.95077
Target:  5'- uUCGUCgUUuauuGUCGGGAaggGGGAGAGGGg -3'
miRNA:   3'- cGGCAGgAGc---UAGCCCU---CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 149515 0.66 0.958243
Target:  5'- gGCCGcggCCg-GAgCGGGccggccAGGAGGAGGAc -3'
miRNA:   3'- -CGGCa--GGagCUaGCCC------UCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 12073 0.66 0.946718
Target:  5'- cGCCGUCgaCGAUCGGGAcGgcGAc-- -3'
miRNA:   3'- -CGGCAGgaGCUAGCCCUcCuuCUccu -5'
8944 5' -56.7 NC_002512.2 + 86218 0.66 0.954611
Target:  5'- cGCCcggCUUCGGggaGGGGGacGAGGAGGAc -3'
miRNA:   3'- -CGGca-GGAGCUag-CCCUC--CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 97201 0.66 0.95077
Target:  5'- cCCGUCUgcggcggCGGgccgggCGGGAcgucgaggcgcuGGGAGAGGAg -3'
miRNA:   3'- cGGCAGGa------GCUa-----GCCCU------------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 86516 0.66 0.954611
Target:  5'- aGCCGUCCUUGAgcgGGGAGGc------ -3'
miRNA:   3'- -CGGCAGGAGCUag-CCCUCCuucuccu -5'
8944 5' -56.7 NC_002512.2 + 5094 0.66 0.954611
Target:  5'- cGCCGgCgUCGGcgCGGGcGGGAGAGa- -3'
miRNA:   3'- -CGGCaGgAGCUa-GCCCuCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 10432 0.66 0.958243
Target:  5'- -gCGUCgUCGccGUCGGGcacGGGGgcgcGGAGGAg -3'
miRNA:   3'- cgGCAGgAGC--UAGCCC---UCCU----UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 229419 0.66 0.958243
Target:  5'- gGCCgGUCCUCcuccccCGGGggcgucuugcaAGGggGGGGGg -3'
miRNA:   3'- -CGG-CAGGAGcua---GCCC-----------UCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 223817 0.66 0.959639
Target:  5'- cGCCGggacgacgacggcgCgUCGGagGGGaAGGAGGAGGc -3'
miRNA:   3'- -CGGCa-------------GgAGCUagCCC-UCCUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 189232 0.66 0.958243
Target:  5'- uCCGUCCgUCGccGUCGcGGAcgucaccgucgGGGAGAGGu -3'
miRNA:   3'- cGGCAGG-AGC--UAGC-CCU-----------CCUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 96184 0.66 0.954611
Target:  5'- aCCGUCCggUGGUcCGGGAGGcggccgcGAGGu -3'
miRNA:   3'- cGGCAGGa-GCUA-GCCCUCCuu-----CUCCu -5'
8944 5' -56.7 NC_002512.2 + 88183 0.66 0.958243
Target:  5'- -gCGUCCggGAUCGaGGAGGGAGucGu -3'
miRNA:   3'- cgGCAGGagCUAGC-CCUCCUUCucCu -5'
8944 5' -56.7 NC_002512.2 + 193616 0.66 0.958243
Target:  5'- cGCgGg----GAUgGGGGGGAAGAGGAu -3'
miRNA:   3'- -CGgCaggagCUAgCCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 15 0.66 0.958243
Target:  5'- gGCCgGUCCUCcuccccCGGGggcgucuugcaAGGggGGGGGg -3'
miRNA:   3'- -CGG-CAGGAGcua---GCCC-----------UCCuuCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.