miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 86516 0.66 0.954611
Target:  5'- aGCCGUCCUUGAgcgGGGAGGc------ -3'
miRNA:   3'- -CGGCAGGAGCUag-CCCUCCuucuccu -5'
8944 5' -56.7 NC_002512.2 + 21446 0.66 0.95077
Target:  5'- -aCGUCCgacUCGAUCGGGGGccGGcgccGGGAg -3'
miRNA:   3'- cgGCAGG---AGCUAGCCCUCcuUC----UCCU- -5'
8944 5' -56.7 NC_002512.2 + 131972 0.66 0.95077
Target:  5'- uUCGUCgUUuauuGUCGGGAaggGGGAGAGGGg -3'
miRNA:   3'- cGGCAGgAGc---UAGCCCU---CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 97201 0.66 0.95077
Target:  5'- cCCGUCUgcggcggCGGgccgggCGGGAcgucgaggcgcuGGGAGAGGAg -3'
miRNA:   3'- cGGCAGGa------GCUa-----GCCCU------------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 12073 0.66 0.946718
Target:  5'- cGCCGUCgaCGAUCGGGAcGgcGAc-- -3'
miRNA:   3'- -CGGCAGgaGCUAGCCCUcCuuCUccu -5'
8944 5' -56.7 NC_002512.2 + 5094 0.66 0.954611
Target:  5'- cGCCGgCgUCGGcgCGGGcGGGAGAGa- -3'
miRNA:   3'- -CGGCaGgAGCUa-GCCCuCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 133219 0.66 0.942452
Target:  5'- cGUCGUCCgcccagCGAggaCGGGAGGgcGGcGGc -3'
miRNA:   3'- -CGGCAGGa-----GCUa--GCCCUCCuuCU-CCu -5'
8944 5' -56.7 NC_002512.2 + 86218 0.66 0.954611
Target:  5'- cGCCcggCUUCGGggaGGGGGacGAGGAGGAc -3'
miRNA:   3'- -CGGca-GGAGCUag-CCCUC--CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 112167 0.66 0.941131
Target:  5'- aGCCGgCgCUCGAgcccgcacgcgCGgagcauggccacccGGAGGAAGAGGAu -3'
miRNA:   3'- -CGGCaG-GAGCUa----------GC--------------CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 150046 0.66 0.942452
Target:  5'- gGCCGgggaCgaCGGggCGGGAGGggG-GGAc -3'
miRNA:   3'- -CGGCa---GgaGCUa-GCCCUCCuuCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 145779 0.67 0.937971
Target:  5'- cGCUGUggCCg----CGGGAGGAGGuGGAg -3'
miRNA:   3'- -CGGCA--GGagcuaGCCCUCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 226196 0.67 0.937971
Target:  5'- gGUCGaCCUCcGUCGGGGacGGGAGGAc -3'
miRNA:   3'- -CGGCaGGAGcUAGCCCUccUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 199632 0.67 0.935178
Target:  5'- cGCgCGUCCgCGGggacccguuucccgCGgacGGAGGAGGGGGAg -3'
miRNA:   3'- -CG-GCAGGaGCUa-------------GC---CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 113193 0.67 0.93182
Target:  5'- cGCCGUCCgcuccgCGAgCGGGAGccggguccucgcccGggGAGa- -3'
miRNA:   3'- -CGGCAGGa-----GCUaGCCCUC--------------CuuCUCcu -5'
8944 5' -56.7 NC_002512.2 + 183496 0.67 0.933272
Target:  5'- gGCCG-CCUaCGGcCGcGAGGggGAGGc -3'
miRNA:   3'- -CGGCaGGA-GCUaGCcCUCCuuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 101770 0.67 0.91229
Target:  5'- uCCGUCggCGGgaacccUCGGGAGG-AGAGGc -3'
miRNA:   3'- cGGCAGgaGCU------AGCCCUCCuUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 86584 0.67 0.917316
Target:  5'- uCCGUCCUucgcucgccgcgaUGGUCGGGGGGAgcGGucGGu -3'
miRNA:   3'- cGGCAGGA-------------GCUAGCCCUCCU--UCucCU- -5'
8944 5' -56.7 NC_002512.2 + 70695 0.67 0.917863
Target:  5'- aCCGgCCgggCGGgggaCGGGGGGAcgGGGGGAc -3'
miRNA:   3'- cGGCaGGa--GCUa---GCCCUCCU--UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 221335 0.67 0.917863
Target:  5'- uGCCuUCgCUCGAccgCGGGAGaagauGGAGGAg -3'
miRNA:   3'- -CGGcAG-GAGCUa--GCCCUCcu---UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 116338 0.67 0.932306
Target:  5'- gGUCGUCUUCGccgccuuccacCGGGAGacGggGAGGGu -3'
miRNA:   3'- -CGGCAGGAGCua---------GCCCUC--CuuCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.