miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 205300 0.72 0.704243
Target:  5'- aGCgGUCCccgcgUCGAcggacCGGGAGGGagGGAGGAg -3'
miRNA:   3'- -CGgCAGG-----AGCUa----GCCCUCCU--UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 118283 0.72 0.713804
Target:  5'- gGCCGcCCUCG-UCcGGAGGAAGAuccGGGc -3'
miRNA:   3'- -CGGCaGGAGCuAGcCCUCCUUCU---CCU- -5'
8944 5' -56.7 NC_002512.2 + 155924 0.72 0.693662
Target:  5'- -gCGUCCUCcagcuUCGGGAgcagcggcgacgaGGAGGAGGAg -3'
miRNA:   3'- cgGCAGGAGcu---AGCCCU-------------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 161956 0.72 0.704243
Target:  5'- uCCGUCCgga---GGGAGGAAGAGGc -3'
miRNA:   3'- cGGCAGGagcuagCCCUCCUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 228087 0.72 0.704243
Target:  5'- gGCUG-CacaCGGUCGGGAGcGAGGAGGGc -3'
miRNA:   3'- -CGGCaGga-GCUAGCCCUC-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 29251 0.72 0.684963
Target:  5'- uCCGUCCUcCGAcgGGGAcGAGGAGGAc -3'
miRNA:   3'- cGGCAGGA-GCUagCCCUcCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 226448 0.71 0.779382
Target:  5'- cGCCGUCaccgaccagccccgCGAggCGGGAGGAGGccGGGGc -3'
miRNA:   3'- -CGGCAGga------------GCUa-GCCCUCCUUC--UCCU- -5'
8944 5' -56.7 NC_002512.2 + 127200 0.71 0.732726
Target:  5'- cGCCGacgCC-CGAgaCGGGGGGAuGAGGGa -3'
miRNA:   3'- -CGGCa--GGaGCUa-GCCCUCCUuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 21229 0.71 0.778494
Target:  5'- cGCCGcCCggggCGGagaCGGGGGcGGAGAGGGc -3'
miRNA:   3'- -CGGCaGGa---GCUa--GCCCUC-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 88889 0.71 0.778494
Target:  5'- cGCCGUCCUucgCGAUCGcGGuccguucGGGAGcGGAc -3'
miRNA:   3'- -CGGCAGGA---GCUAGC-CCu------CCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 154547 0.71 0.769548
Target:  5'- cGCCGccuccgCCUCGGUCGccauGGGGggGcAGGAu -3'
miRNA:   3'- -CGGCa-----GGAGCUAGCc---CUCCuuC-UCCU- -5'
8944 5' -56.7 NC_002512.2 + 91575 0.71 0.760491
Target:  5'- uGCCaGggCUCGGgcgcguguuUCGGGAGGAAGuGGAu -3'
miRNA:   3'- -CGG-CagGAGCU---------AGCCCUCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 101513 0.71 0.742072
Target:  5'- cGCCG-CCggCGAcgGGGAGGgcGAGGGg -3'
miRNA:   3'- -CGGCaGGa-GCUagCCCUCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 153811 0.71 0.750408
Target:  5'- cGCCGguUCCUCGucGUCGuccgaagaacggaGGAGGGAGaAGGAg -3'
miRNA:   3'- -CGGC--AGGAGC--UAGC-------------CCUCCUUC-UCCU- -5'
8944 5' -56.7 NC_002512.2 + 65734 0.7 0.821267
Target:  5'- gGgUGUCCUCGAUgaucUGGGu-GAAGAGGAa -3'
miRNA:   3'- -CgGCAGGAGCUA----GCCCucCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 63129 0.7 0.812998
Target:  5'- aGCCGUCCaCGAgcaGGGuGGAguaacAGAGGu -3'
miRNA:   3'- -CGGCAGGaGCUag-CCCuCCU-----UCUCCu -5'
8944 5' -56.7 NC_002512.2 + 59289 0.7 0.812998
Target:  5'- cGUCGUgCUCGAcggacUCGGGucGGGAcacggcgacGGAGGAg -3'
miRNA:   3'- -CGGCAgGAGCU-----AGCCC--UCCU---------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 63104 0.7 0.812998
Target:  5'- -aCGUCCUCGucCGGGAcgGGAGGAGa- -3'
miRNA:   3'- cgGCAGGAGCuaGCCCU--CCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 121827 0.7 0.804579
Target:  5'- cGCCGUCggcCGGaCGGGGGGGaggacggcggGGAGGAc -3'
miRNA:   3'- -CGGCAGga-GCUaGCCCUCCU----------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 139803 0.7 0.804579
Target:  5'- gGCCGgcgggggCCUCGGUCGGGuguccaAGGAcGuGGGc -3'
miRNA:   3'- -CGGCa------GGAGCUAGCCC------UCCUuCuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.