Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 143228 | 0.68 | 0.862671 |
Target: 5'- cCGUCcgCUCgGACGCGGCcaCC-GCGAu -3' miRNA: 3'- aGCAGa-GAGgCUGCGCUGa-GGaCGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 107338 | 0.69 | 0.847805 |
Target: 5'- aCGUC-CUCCGuCGCGGCgagCCUGa-- -3' miRNA: 3'- aGCAGaGAGGCuGCGCUGa--GGACgcu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 155563 | 0.69 | 0.838539 |
Target: 5'- aCGUCggacuaugggacCUCUGACGCGGuCUCgCUGCGu -3' miRNA: 3'- aGCAGa-----------GAGGCUGCGCU-GAG-GACGCu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 192985 | 0.69 | 0.832224 |
Target: 5'- -gGUC-CUCCGGCGCG-CUCUggaccGCGGg -3' miRNA: 3'- agCAGaGAGGCUGCGCuGAGGa----CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 105128 | 0.69 | 0.81598 |
Target: 5'- gUCGUCUgggCCGACGaCGGCUCCa-CGAa -3' miRNA: 3'- -AGCAGAga-GGCUGC-GCUGAGGacGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 172685 | 0.69 | 0.81598 |
Target: 5'- cUCGUCUCcgUCCuGCGCGACcgcugCC-GCGAg -3' miRNA: 3'- -AGCAGAG--AGGcUGCGCUGa----GGaCGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 3488 | 0.69 | 0.81598 |
Target: 5'- aUCGUCg--CCG-C-CGACUCCUGCGu -3' miRNA: 3'- -AGCAGagaGGCuGcGCUGAGGACGCu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 109001 | 0.69 | 0.81598 |
Target: 5'- cUCGUCggcgCCGGCgGCGuCgUCCUGCGGa -3' miRNA: 3'- -AGCAGaga-GGCUG-CGCuG-AGGACGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 153613 | 0.7 | 0.807625 |
Target: 5'- cCGUCUCgUCCGuCGUGACuaaUCCUucgGCGGa -3' miRNA: 3'- aGCAGAG-AGGCuGCGCUG---AGGA---CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 171799 | 0.7 | 0.807625 |
Target: 5'- cUCGUCccgaCGGCGCGcGCUCCUGCu- -3' miRNA: 3'- -AGCAGagagGCUGCGC-UGAGGACGcu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 81413 | 0.71 | 0.754714 |
Target: 5'- cUCGUcCUCcccgCCGuCGCGGCUCCgucccGCGGg -3' miRNA: 3'- -AGCA-GAGa---GGCuGCGCUGAGGa----CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 133361 | 0.71 | 0.736203 |
Target: 5'- cCGgCUCacaccgCCGGCGCGGCUCCcuccgGCGGu -3' miRNA: 3'- aGCaGAGa-----GGCUGCGCUGAGGa----CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 175824 | 0.72 | 0.669233 |
Target: 5'- cCG-CUCgUCCGugGCGcCUCCUGCc- -3' miRNA: 3'- aGCaGAG-AGGCugCGCuGAGGACGcu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 168952 | 0.74 | 0.591155 |
Target: 5'- cUCG-CUCUCCGACGCGaagcGCUUC-GCGGu -3' miRNA: 3'- -AGCaGAGAGGCUGCGC----UGAGGaCGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 94671 | 0.74 | 0.552557 |
Target: 5'- gUCGgcacgCUCUCCGGCGCGcagcugccCUCgUGCGAc -3' miRNA: 3'- -AGCa----GAGAGGCUGCGCu-------GAGgACGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 225869 | 1.09 | 0.00427 |
Target: 5'- gUCGUCUCUCCGACGCGACUCCUGCGAc -3' miRNA: 3'- -AGCAGAGAGGCUGCGCUGAGGACGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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