miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 79964 0.67 0.849537
Target:  5'- -gCCGucGGAaGCG-GUCGGCCGAGGa -3'
miRNA:   3'- agGGCu-CCUcUGCgCAGCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 150224 0.67 0.849536
Target:  5'- -gCCGGGGAGGCgaucgagaucGCGuucUCGGacgaCGAGGGg -3'
miRNA:   3'- agGGCUCCUCUG----------CGC---AGCUg---GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 160864 0.67 0.842088
Target:  5'- gUCgCaGAGGggcGGACaCGUCGGCgGAGGGu -3'
miRNA:   3'- -AGgG-CUCC---UCUGcGCAGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 228405 0.67 0.842088
Target:  5'- gUCCG-GGGGACGgGgCG-CUGGGGGg -3'
miRNA:   3'- aGGGCuCCUCUGCgCaGCuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 135972 0.67 0.842088
Target:  5'- gCCCGucuGGGAgGGCGCGggGuuCGGGGGa -3'
miRNA:   3'- aGGGC---UCCU-CUGCGCagCugGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 94997 0.67 0.842088
Target:  5'- aUCCggaUGAGGAcgcGuCGCGUCGuCCGGGGc -3'
miRNA:   3'- -AGG---GCUCCU---CuGCGCAGCuGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 98156 0.67 0.837539
Target:  5'- cCCCGGcggucgccgcggucuGGAcgGGCGCGgCGAccguCCGAGGGa -3'
miRNA:   3'- aGGGCU---------------CCU--CUGCGCaGCU----GGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 102927 0.67 0.834474
Target:  5'- cCCCuacuGGGAG-CGCcagaggGUCGACCGGGGc -3'
miRNA:   3'- aGGGc---UCCUCuGCG------CAGCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 81476 0.67 0.834474
Target:  5'- gUCCCGcAGGAGGCacgGCagGUCGGCC-AGGu -3'
miRNA:   3'- -AGGGC-UCCUCUG---CG--CAGCUGGcUCCc -5'
8945 5' -59.6 NC_002512.2 + 228481 0.67 0.834474
Target:  5'- -aCCGAGGGGAC-CGaaGACgCGgAGGGg -3'
miRNA:   3'- agGGCUCCUCUGcGCagCUG-GC-UCCC- -5'
8945 5' -59.6 NC_002512.2 + 158853 0.67 0.834474
Target:  5'- --gCGGGGGGACGUcgucGUCGACCGGccGGcGg -3'
miRNA:   3'- aggGCUCCUCUGCG----CAGCUGGCU--CC-C- -5'
8945 5' -59.6 NC_002512.2 + 164627 0.67 0.834474
Target:  5'- aUCUCGAGGAGuccggacggcAgGCGgCGAUCGGGGu -3'
miRNA:   3'- -AGGGCUCCUC----------UgCGCaGCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 228105 0.67 0.832932
Target:  5'- --gCGAGGAGG-GCGUCGGCCGcaacgucgugcuGGGc -3'
miRNA:   3'- aggGCUCCUCUgCGCAGCUGGCu-----------CCC- -5'
8945 5' -59.6 NC_002512.2 + 123138 0.67 0.82983
Target:  5'- gUCCCG-GGGGACGgGgcggcggcgccgcgaUCGccGCCGAGGc -3'
miRNA:   3'- -AGGGCuCCUCUGCgC---------------AGC--UGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 218776 0.67 0.826702
Target:  5'- cCCCGuccGGGGACGa---GGCCGAGGcGg -3'
miRNA:   3'- aGGGCu--CCUCUGCgcagCUGGCUCC-C- -5'
8945 5' -59.6 NC_002512.2 + 95697 0.67 0.826702
Target:  5'- cUCCGGcGGGGACGgGg-GGCCGGGaGGg -3'
miRNA:   3'- aGGGCU-CCUCUGCgCagCUGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 50708 0.67 0.826702
Target:  5'- gCCCGAGGAcccGGCGaagGUCG-CC-AGGGa -3'
miRNA:   3'- aGGGCUCCU---CUGCg--CAGCuGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 57998 0.67 0.826702
Target:  5'- gUCCCGGGGAcGAgGgGgacGCCGAGGa -3'
miRNA:   3'- -AGGGCUCCU-CUgCgCagcUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 88170 0.67 0.826702
Target:  5'- gCCCG-GGAcGGuCGCGUCcggGAUCGAGGa -3'
miRNA:   3'- aGGGCuCCU-CU-GCGCAG---CUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 129091 0.67 0.826702
Target:  5'- cCCCGAGGAcgGGCgGCGUCuGCgGcGGGc -3'
miRNA:   3'- aGGGCUCCU--CUG-CGCAGcUGgCuCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.