miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 8047 0.66 0.870842
Target:  5'- gUCCCGAGGcGcccccGCGgGUCGgacGCCGAGa- -3'
miRNA:   3'- -AGGGCUCCuC-----UGCgCAGC---UGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 102869 0.66 0.870842
Target:  5'- -aCCGGGGGGACGCcua---CGGGGGa -3'
miRNA:   3'- agGGCUCCUCUGCGcagcugGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 218093 0.66 0.870841
Target:  5'- gUCCGuGGGGAagcggGCGUCGcGCCcGGGGu -3'
miRNA:   3'- aGGGCuCCUCUg----CGCAGC-UGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 228441 0.66 0.870841
Target:  5'- --aCGGGGAGgagcggacGCGCGUauauaGacGCCGAGGGg -3'
miRNA:   3'- aggGCUCCUC--------UGCGCAg----C--UGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 147663 0.67 0.863918
Target:  5'- cUCCuCGcGGGGGCGCGaCGAC--GGGGa -3'
miRNA:   3'- -AGG-GCuCCUCUGCGCaGCUGgcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 47494 0.67 0.863918
Target:  5'- -gCCGGGGAGACGC--UGGCC-AGGa -3'
miRNA:   3'- agGGCUCCUCUGCGcaGCUGGcUCCc -5'
8945 5' -59.6 NC_002512.2 + 45247 0.67 0.863918
Target:  5'- gCCCGcGGAcuCGcCGUCGGCCGccggcGGGGc -3'
miRNA:   3'- aGGGCuCCUcuGC-GCAGCUGGC-----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 130782 0.67 0.863918
Target:  5'- aCCaCGAGGAgggccgccGACGCGcagcacgcggUGGCCGAGGu -3'
miRNA:   3'- aGG-GCUCCU--------CUGCGCa---------GCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 222631 0.67 0.861806
Target:  5'- aUCCCGAcGGAcgccgcuccgccgcGACGgcCGgccgGGCCGAGGGg -3'
miRNA:   3'- -AGGGCU-CCU--------------CUGC--GCag--CUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 155809 0.67 0.861806
Target:  5'- cCUCGAGGAGGcCGUGUcCGugCagauccgcucccggGAGGGc -3'
miRNA:   3'- aGGGCUCCUCU-GCGCA-GCugG--------------CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 134207 0.67 0.859678
Target:  5'- gCCgGAGGcccggcGGACGCG-CGcucacgagaggcuguGCCGGGGGc -3'
miRNA:   3'- aGGgCUCC------UCUGCGCaGC---------------UGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 147215 0.67 0.856815
Target:  5'- gCCCGAGcGGGAC-CG-CGAaaacagCGAGGGa -3'
miRNA:   3'- aGGGCUC-CUCUGcGCaGCUg-----GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 99264 0.67 0.856815
Target:  5'- cCCCGAGGAcgccgGACGCGgggUCGAgCagGAGGc -3'
miRNA:   3'- aGGGCUCCU-----CUGCGC---AGCUgG--CUCCc -5'
8945 5' -59.6 NC_002512.2 + 38682 0.67 0.856815
Target:  5'- cCCCGGGGaAGAC-CGagcCGACgGAGGa -3'
miRNA:   3'- aGGGCUCC-UCUGcGCa--GCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 49460 0.67 0.856815
Target:  5'- gCCCGGGGcgccgucaccgaGGACGaCuUCGACuacgCGAGGGa -3'
miRNA:   3'- aGGGCUCC------------UCUGC-GcAGCUG----GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 47953 0.67 0.856815
Target:  5'- gCCCGAGGAacgagGugGCGgaGGCCGcGGa -3'
miRNA:   3'- aGGGCUCCU-----CugCGCagCUGGCuCCc -5'
8945 5' -59.6 NC_002512.2 + 97808 0.67 0.856815
Target:  5'- cUCgCUGAacuccGGGGACGCGgaguagagggCGGCgCGGGGGa -3'
miRNA:   3'- -AG-GGCU-----CCUCUGCGCa---------GCUG-GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 138601 0.67 0.856815
Target:  5'- -gCCGGGGAGACGC--UGGCCaAGGu -3'
miRNA:   3'- agGGCUCCUCUGCGcaGCUGGcUCCc -5'
8945 5' -59.6 NC_002512.2 + 22516 0.67 0.856095
Target:  5'- -aUCGuGGGGACGCcgaacgcgucgguGUCGAUCGGGGc -3'
miRNA:   3'- agGGCuCCUCUGCG-------------CAGCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 79964 0.67 0.849537
Target:  5'- -gCCGucGGAaGCG-GUCGGCCGAGGa -3'
miRNA:   3'- agGGCu-CCUcUGCgCAGCUGGCUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.