miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 227314 0.7 0.667389
Target:  5'- -aUgGGGGAGACGCGcCGGcgcCCGAGGa -3'
miRNA:   3'- agGgCUCCUCUGCGCaGCU---GGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 136 0.7 0.66739
Target:  5'- gCgaGAGGAGGCG-GUCGGCgGAGGa -3'
miRNA:   3'- aGggCUCCUCUGCgCAGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 224586 0.7 0.674006
Target:  5'- aCCCGGGuuacgucagggcgcGGGACGCGgugcCGACCGGgcucGGGg -3'
miRNA:   3'- aGGGCUC--------------CUCUGCGCa---GCUGGCU----CCC- -5'
8945 5' -59.6 NC_002512.2 + 215591 0.7 0.676838
Target:  5'- aCCCGuGGGAGGacaGCGUCGuCCGGGu- -3'
miRNA:   3'- aGGGC-UCCUCUg--CGCAGCuGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 208354 0.7 0.686254
Target:  5'- cCCCGAGGAGcagguGCGUuUCGACgaCGAGGu -3'
miRNA:   3'- aGGGCUCCUC-----UGCGcAGCUG--GCUCCc -5'
8945 5' -59.6 NC_002512.2 + 3771 0.7 0.686254
Target:  5'- gCCCGAGGAGACGgacccggaGUCGgACCGGa-- -3'
miRNA:   3'- aGGGCUCCUCUGCg-------CAGC-UGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 98316 0.7 0.686254
Target:  5'- uUCCCGAGG-GGCuCGg-GGCCGGGGa -3'
miRNA:   3'- -AGGGCUCCuCUGcGCagCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 229542 0.7 0.695633
Target:  5'- ---aGAGGAGGCG-GUCGGCgGAGGa -3'
miRNA:   3'- agggCUCCUCUGCgCAGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 102278 0.7 0.704964
Target:  5'- aUCUCGGcucGGc-GCGCGUCGACCGccAGGGc -3'
miRNA:   3'- -AGGGCU---CCucUGCGCAGCUGGC--UCCC- -5'
8945 5' -59.6 NC_002512.2 + 45608 0.7 0.704964
Target:  5'- uUCCCGAucuggaugccGGAGACGCc-CGACagcuugacguaCGAGGGg -3'
miRNA:   3'- -AGGGCU----------CCUCUGCGcaGCUG-----------GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 73966 0.7 0.704964
Target:  5'- cUCCCGAagcuGGAgGACGCGUCGgcGCCGGa-- -3'
miRNA:   3'- -AGGGCU----CCU-CUGCGCAGC--UGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 226582 0.7 0.704964
Target:  5'- cCCCGgccAGGAGG-GCG-CGGCCcGGGGGa -3'
miRNA:   3'- aGGGC---UCCUCUgCGCaGCUGG-CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 132013 0.7 0.704964
Target:  5'- -gCCGGGGGgaccucggcggcGACGuCGUCGGCC-AGGGa -3'
miRNA:   3'- agGGCUCCU------------CUGC-GCAGCUGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 195560 0.7 0.704964
Target:  5'- cUCCCGGGucGcCGgGUCccugaagugGACCGAGGGg -3'
miRNA:   3'- -AGGGCUCcuCuGCgCAG---------CUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 80796 0.7 0.708683
Target:  5'- gCgCGAGGAGgaggagcgcgcgcgcGCcucgGCGUCGGCgGAGGGg -3'
miRNA:   3'- aGgGCUCCUC---------------UG----CGCAGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 219688 0.7 0.714243
Target:  5'- gCCCGAGGAcGAggaggaGCGUCGGCgCucGGGg -3'
miRNA:   3'- aGGGCUCCU-CUg-----CGCAGCUG-GcuCCC- -5'
8945 5' -59.6 NC_002512.2 + 131726 0.7 0.714243
Target:  5'- gCCCGuccAGACGCGgCGACCGccGGGGc -3'
miRNA:   3'- aGGGCuccUCUGCGCaGCUGGC--UCCC- -5'
8945 5' -59.6 NC_002512.2 + 96981 0.7 0.714243
Target:  5'- gCCCGcGaGAGuauCGCGUCG-CCGGGGa -3'
miRNA:   3'- aGGGCuC-CUCu--GCGCAGCuGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 223704 0.69 0.723462
Target:  5'- aCCCGAaGAGuCGUugGaCGACCGGGGGc -3'
miRNA:   3'- aGGGCUcCUCuGCG--CaGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 102389 0.69 0.723462
Target:  5'- --aCGAGGGGAUGCuccCGcCCGAGGGc -3'
miRNA:   3'- aggGCUCCUCUGCGca-GCuGGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.