miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 225782 0.72 0.563258
Target:  5'- uUCCCGAGGcugcgccggccGGGcCGCGggCGGCCGGGuGGc -3'
miRNA:   3'- -AGGGCUCC-----------UCU-GCGCa-GCUGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 195087 0.72 0.572628
Target:  5'- aCUCGAGGGGuCGa---GGCCGAGGGg -3'
miRNA:   3'- aGGGCUCCUCuGCgcagCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 113227 0.72 0.582034
Target:  5'- gCCCGGGGAGACGggcaCGgcagcaggagccUCGGCagCGAGGGg -3'
miRNA:   3'- aGGGCUCCUCUGC----GC------------AGCUG--GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 201760 0.72 0.600934
Target:  5'- aUCCCG-GGGGACGgGagGGaCGAGGGu -3'
miRNA:   3'- -AGGGCuCCUCUGCgCagCUgGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 8189 0.72 0.600934
Target:  5'- aCCCGAGGccgaGCGUCG-CCGGGcGGg -3'
miRNA:   3'- aGGGCUCCucugCGCAGCuGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 99888 0.71 0.610417
Target:  5'- aCCgGgAGGAGGCGCGgcccgUCGagggcGCCGGGGGc -3'
miRNA:   3'- aGGgC-UCCUCUGCGC-----AGC-----UGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 77200 0.71 0.619913
Target:  5'- -aUCGAGGAGGCcccccuGCGUCGAgCGAccGGGa -3'
miRNA:   3'- agGGCUCCUCUG------CGCAGCUgGCU--CCC- -5'
8945 5' -59.6 NC_002512.2 + 81831 0.71 0.619913
Target:  5'- cUCCGAGaGGACGaCGaCGAgCGAGGGg -3'
miRNA:   3'- aGGGCUCcUCUGC-GCaGCUgGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 8785 0.71 0.619913
Target:  5'- cUCCCGAGGAGGCGC-----CgGAGGGc -3'
miRNA:   3'- -AGGGCUCCUCUGCGcagcuGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 58909 0.71 0.619913
Target:  5'- -aCCGAcGGAGAuaaaauugagcCGCGagUCGAUCGAGGGc -3'
miRNA:   3'- agGGCU-CCUCU-----------GCGC--AGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 77190 0.71 0.619913
Target:  5'- cCCCGAccGGGGACGCGacgaGACCGGGc- -3'
miRNA:   3'- aGGGCU--CCUCUGCGCag--CUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 229482 0.71 0.629418
Target:  5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3'
miRNA:   3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 78 0.71 0.629418
Target:  5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3'
miRNA:   3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 127034 0.71 0.638924
Target:  5'- cCCCGgucGGGAuACGCGUacggCGGCgGAGGGa -3'
miRNA:   3'- aGGGC---UCCUcUGCGCA----GCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 24846 0.71 0.638924
Target:  5'- gCCCGcGGccggucggcggcGGACGCGgcccCGACCGAGGc -3'
miRNA:   3'- aGGGCuCC------------UCUGCGCa---GCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 204801 0.71 0.638924
Target:  5'- gCCCG-GGAGGucCGCGUC--CCGGGGGc -3'
miRNA:   3'- aGGGCuCCUCU--GCGCAGcuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 70686 0.71 0.645576
Target:  5'- uUCCCGGGGAccggccgggcggggGACGgGggGACgGGGGGa -3'
miRNA:   3'- -AGGGCUCCU--------------CUGCgCagCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 31803 0.71 0.648426
Target:  5'- --aCGGGGAGACGcCGgggcgCGGUCGAGGGg -3'
miRNA:   3'- aggGCUCCUCUGC-GCa----GCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 109018 0.71 0.657917
Target:  5'- cCUCGAGGggcGGGCGgggaCGagGACCGGGGGg -3'
miRNA:   3'- aGGGCUCC---UCUGC----GCagCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 45045 0.71 0.657917
Target:  5'- aCCCGAGGAuGAgCGaGUCGAUgGAGGu -3'
miRNA:   3'- aGGGCUCCU-CU-GCgCAGCUGgCUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.