Results 1 - 20 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8945 | 5' | -59.6 | NC_002512.2 | + | 225906 | 1.11 | 0.002227 |
Target: 5'- cUCCCGAGGAGACGCGUCGACCGAGGGg -3' miRNA: 3'- -AGGGCUCCUCUGCGCAGCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 204761 | 0.81 | 0.203523 |
Target: 5'- aUCCCGGccuGGGGCGCGgggaCGACCGGGGGa -3' miRNA: 3'- -AGGGCUc--CUCUGCGCa---GCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 99978 | 0.8 | 0.213079 |
Target: 5'- cCCCGAGGAGACGggagagcggauCGUCGGC-GAGGGc -3' miRNA: 3'- aGGGCUCCUCUGC-----------GCAGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 57027 | 0.78 | 0.297485 |
Target: 5'- -aCCGGGGGGAgcggaggcCGCGUccgaCGACCGGGGGg -3' miRNA: 3'- agGGCUCCUCU--------GCGCA----GCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 25921 | 0.77 | 0.330879 |
Target: 5'- gUCCaUGAGGucGAugUGCGUCGGCCGGGGGc -3' miRNA: 3'- -AGG-GCUCCu-CU--GCGCAGCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 99016 | 0.77 | 0.344988 |
Target: 5'- cCCCGAuaGGGCGCGUCGGC-GAGGGc -3' miRNA: 3'- aGGGCUccUCUGCGCAGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 85559 | 0.76 | 0.359525 |
Target: 5'- gCUCGAGGAGGCGCGggagcgggagCGGCCGGGa- -3' miRNA: 3'- aGGGCUCCUCUGCGCa---------GCUGGCUCcc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 166008 | 0.76 | 0.373726 |
Target: 5'- cUCCCGAcggcuccGGGGACGCGUucggCGGCCGuuccGGGg -3' miRNA: 3'- -AGGGCU-------CCUCUGCGCA----GCUGGCu---CCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 124793 | 0.75 | 0.413682 |
Target: 5'- aCCCGGGGAGACaCGUCGACCcGAc-- -3' miRNA: 3'- aGGGCUCCUCUGcGCAGCUGG-CUccc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 147279 | 0.75 | 0.421819 |
Target: 5'- aCCCG-GGAcgccGCGCGUCGuucCCGGGGGg -3' miRNA: 3'- aGGGCuCCUc---UGCGCAGCu--GGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 14043 | 0.75 | 0.446799 |
Target: 5'- uUCCCGAaggcGGcGGCGCGUucCGGCCGGGaGGg -3' miRNA: 3'- -AGGGCU----CCuCUGCGCA--GCUGGCUC-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 215046 | 0.74 | 0.469098 |
Target: 5'- gUCCCGAGGAGcucaccgucgucgGCgGCGUCuaccgcgucggcggGACCGAGGa -3' miRNA: 3'- -AGGGCUCCUC-------------UG-CGCAG--------------CUGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 142050 | 0.74 | 0.490178 |
Target: 5'- gCCgCGAGGGcccGACGCc-CGGCCGGGGGa -3' miRNA: 3'- aGG-GCUCCU---CUGCGcaGCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 75039 | 0.73 | 0.49909 |
Target: 5'- --aCGAGGGGACGCa-CGACgGAGGGc -3' miRNA: 3'- aggGCUCCUCUGCGcaGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 226180 | 0.73 | 0.49909 |
Target: 5'- aCCCGGGGAGcgacCGgGUCGACCuccgucGGGGa -3' miRNA: 3'- aGGGCUCCUCu---GCgCAGCUGGc-----UCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 142275 | 0.73 | 0.508075 |
Target: 5'- gUCCGGgccGGGGACgGCGUCGACgGGGGa -3' miRNA: 3'- aGGGCU---CCUCUG-CGCAGCUGgCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 86334 | 0.73 | 0.517126 |
Target: 5'- cCCgCGGGGAGACGCG-CGGCCGccGa -3' miRNA: 3'- aGG-GCUCCUCUGCGCaGCUGGCucCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 101645 | 0.73 | 0.535417 |
Target: 5'- gCUCGAGGGGAgCGCGgCGGCCGcGGa -3' miRNA: 3'- aGGGCUCCUCU-GCGCaGCUGGCuCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 22309 | 0.72 | 0.55393 |
Target: 5'- gCCagggagaGGGGAGACGCGaggGACgCGAGGGa -3' miRNA: 3'- aGGg------CUCCUCUGCGCag-CUG-GCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 196183 | 0.72 | 0.55393 |
Target: 5'- gCCCGAGGGGGCGa--CGGCCGGGu- -3' miRNA: 3'- aGGGCUCCUCUGCgcaGCUGGCUCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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