miRNA display CGI


Results 1 - 20 of 193 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 102869 0.66 0.870842
Target:  5'- -aCCGGGGGGACGCcua---CGGGGGa -3'
miRNA:   3'- agGGCUCCUCUGCGcagcugGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 97419 0.66 0.873559
Target:  5'- gCCgGGGaGAGACGCG-CGcuccccggacccgccGCCGGGGa -3'
miRNA:   3'- aGGgCUC-CUCUGCGCaGC---------------UGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 53842 0.66 0.896647
Target:  5'- aCCCGGGGGcGGCGCcggGagGAgaGGGGGa -3'
miRNA:   3'- aGGGCUCCU-CUGCG---CagCUggCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 126970 0.66 0.884129
Target:  5'- aCCUGGGGcccGugGcCGUCGACCGcgccAGGc -3'
miRNA:   3'- aGGGCUCCu--CugC-GCAGCUGGC----UCCc -5'
8945 5' -59.6 NC_002512.2 + 17881 0.66 0.890486
Target:  5'- gCCCGGGG-GACGUGauaggCGGcggcggccCCGAGGa -3'
miRNA:   3'- aGGGCUCCuCUGCGCa----GCU--------GGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 80673 0.66 0.883483
Target:  5'- gUCCCGcggcggcggcgacGGGGGcgaGCGgCGuCCGGGGGg -3'
miRNA:   3'- -AGGGC-------------UCCUCug-CGCaGCuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 122048 0.66 0.87758
Target:  5'- gCCCGGGGcGGCGuCGgCGGCUGugacgacagcGGGGg -3'
miRNA:   3'- aGGGCUCCuCUGC-GCaGCUGGC----------UCCC- -5'
8945 5' -59.6 NC_002512.2 + 39951 0.66 0.890486
Target:  5'- -aCCGAGGGGGaGCaGUCGccGCCGAGa- -3'
miRNA:   3'- agGGCUCCUCUgCG-CAGC--UGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 107169 0.66 0.890486
Target:  5'- gCCCG-GGAGG-GCGUUGauGCCGugcGGGa -3'
miRNA:   3'- aGGGCuCCUCUgCGCAGC--UGGCu--CCC- -5'
8945 5' -59.6 NC_002512.2 + 8047 0.66 0.870842
Target:  5'- gUCCCGAGGcGcccccGCGgGUCGgacGCCGAGa- -3'
miRNA:   3'- -AGGGCUCCuC-----UGCgCAGC---UGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 13718 0.66 0.884129
Target:  5'- aUCCCGA---GACGCGggaGcCUGAGGGg -3'
miRNA:   3'- -AGGGCUccuCUGCGCag-CuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 15171 0.66 0.896647
Target:  5'- gCCCGGGcGGGCGCugaGUCaGCCuGGGGa -3'
miRNA:   3'- aGGGCUCcUCUGCG---CAGcUGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 104494 0.66 0.87758
Target:  5'- gCCCGGGGAGGuucaggaaGCGUCcgguGACCGcgaAGGa -3'
miRNA:   3'- aGGGCUCCUCUg-------CGCAG----CUGGC---UCCc -5'
8945 5' -59.6 NC_002512.2 + 76935 0.66 0.890486
Target:  5'- aCCCGAccGGGGAcCGCucccgcugacCGACCGGGGa -3'
miRNA:   3'- aGGGCU--CCUCU-GCGca--------GCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 128174 0.66 0.884129
Target:  5'- gCCCG-GG-GACGagGUCG-CCGAGcGGg -3'
miRNA:   3'- aGGGCuCCuCUGCg-CAGCuGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 135323 0.66 0.890486
Target:  5'- cCCCGAGGucg-GCGUCaGCCGcgccGGGGu -3'
miRNA:   3'- aGGGCUCCucugCGCAGcUGGC----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 95655 0.66 0.884129
Target:  5'- gCCUGAGGAGgaACGcCGUgGgGCUGuAGGGg -3'
miRNA:   3'- aGGGCUCCUC--UGC-GCAgC-UGGC-UCCC- -5'
8945 5' -59.6 NC_002512.2 + 60846 0.66 0.896647
Target:  5'- gCCCGAGGAGAUGCcggCG-CCGcucGcGGa -3'
miRNA:   3'- aGGGCUCCUCUGCGca-GCuGGCu--C-CC- -5'
8945 5' -59.6 NC_002512.2 + 86219 0.66 0.884129
Target:  5'- gCCCGgcuucggggaGGGGGACGagGagGACCcGGGGGa -3'
miRNA:   3'- aGGGC----------UCCUCUGCg-CagCUGG-CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 85332 0.66 0.870842
Target:  5'- gUCgCCGGuuGGAGcuuccGCGCGUCGcACaCGAGGa -3'
miRNA:   3'- -AG-GGCU--CCUC-----UGCGCAGC-UG-GCUCCc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.