Results 1 - 20 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8945 | 5' | -59.6 | NC_002512.2 | + | 8047 | 0.66 | 0.870842 |
Target: 5'- gUCCCGAGGcGcccccGCGgGUCGgacGCCGAGa- -3' miRNA: 3'- -AGGGCUCCuC-----UGCgCAGC---UGGCUCcc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 97419 | 0.66 | 0.873559 |
Target: 5'- gCCgGGGaGAGACGCG-CGcuccccggacccgccGCCGGGGa -3' miRNA: 3'- aGGgCUC-CUCUGCGCaGC---------------UGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 107169 | 0.66 | 0.890486 |
Target: 5'- gCCCG-GGAGG-GCGUUGauGCCGugcGGGa -3' miRNA: 3'- aGGGCuCCUCUgCGCAGC--UGGCu--CCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 135323 | 0.66 | 0.890486 |
Target: 5'- cCCCGAGGucg-GCGUCaGCCGcgccGGGGu -3' miRNA: 3'- aGGGCUCCucugCGCAGcUGGC----UCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 122048 | 0.66 | 0.87758 |
Target: 5'- gCCCGGGGcGGCGuCGgCGGCUGugacgacagcGGGGg -3' miRNA: 3'- aGGGCUCCuCUGC-GCaGCUGGC----------UCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 86219 | 0.66 | 0.884129 |
Target: 5'- gCCCGgcuucggggaGGGGGACGagGagGACCcGGGGGa -3' miRNA: 3'- aGGGC----------UCCUCUGCg-CagCUGG-CUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 13718 | 0.66 | 0.884129 |
Target: 5'- aUCCCGA---GACGCGggaGcCUGAGGGg -3' miRNA: 3'- -AGGGCUccuCUGCGCag-CuGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 104494 | 0.66 | 0.87758 |
Target: 5'- gCCCGGGGAGGuucaggaaGCGUCcgguGACCGcgaAGGa -3' miRNA: 3'- aGGGCUCCUCUg-------CGCAG----CUGGC---UCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 60846 | 0.66 | 0.896647 |
Target: 5'- gCCCGAGGAGAUGCcggCG-CCGcucGcGGa -3' miRNA: 3'- aGGGCUCCUCUGCGca-GCuGGCu--C-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 95655 | 0.66 | 0.884129 |
Target: 5'- gCCUGAGGAGgaACGcCGUgGgGCUGuAGGGg -3' miRNA: 3'- aGGGCUCCUC--UGC-GCAgC-UGGC-UCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 17881 | 0.66 | 0.890486 |
Target: 5'- gCCCGGGG-GACGUGauaggCGGcggcggccCCGAGGa -3' miRNA: 3'- aGGGCUCCuCUGCGCa----GCU--------GGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 126970 | 0.66 | 0.884129 |
Target: 5'- aCCUGGGGcccGugGcCGUCGACCGcgccAGGc -3' miRNA: 3'- aGGGCUCCu--CugC-GCAGCUGGC----UCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 85332 | 0.66 | 0.870842 |
Target: 5'- gUCgCCGGuuGGAGcuuccGCGCGUCGcACaCGAGGa -3' miRNA: 3'- -AG-GGCU--CCUC-----UGCGCAGC-UG-GCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 53842 | 0.66 | 0.896647 |
Target: 5'- aCCCGGGGGcGGCGCcggGagGAgaGGGGGa -3' miRNA: 3'- aGGGCUCCU-CUGCG---CagCUggCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 80673 | 0.66 | 0.883483 |
Target: 5'- gUCCCGcggcggcggcgacGGGGGcgaGCGgCGuCCGGGGGg -3' miRNA: 3'- -AGGGC-------------UCCUCug-CGCaGCuGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 39951 | 0.66 | 0.890486 |
Target: 5'- -aCCGAGGGGGaGCaGUCGccGCCGAGa- -3' miRNA: 3'- agGGCUCCUCUgCG-CAGC--UGGCUCcc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 128174 | 0.66 | 0.884129 |
Target: 5'- gCCCG-GG-GACGagGUCG-CCGAGcGGg -3' miRNA: 3'- aGGGCuCCuCUGCg-CAGCuGGCUC-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 76935 | 0.66 | 0.890486 |
Target: 5'- aCCCGAccGGGGAcCGCucccgcugacCGACCGGGGa -3' miRNA: 3'- aGGGCU--CCUCU-GCGca--------GCUGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 102869 | 0.66 | 0.870842 |
Target: 5'- -aCCGGGGGGACGCcua---CGGGGGa -3' miRNA: 3'- agGGCUCCUCUGCGcagcugGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 15171 | 0.66 | 0.896647 |
Target: 5'- gCCCGGGcGGGCGCugaGUCaGCCuGGGGa -3' miRNA: 3'- aGGGCUCcUCUGCG---CAGcUGGcUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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