miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 225906 1.11 0.002227
Target:  5'- cUCCCGAGGAGACGCGUCGACCGAGGGg -3'
miRNA:   3'- -AGGGCUCCUCUGCGCAGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 204761 0.81 0.203523
Target:  5'- aUCCCGGccuGGGGCGCGgggaCGACCGGGGGa -3'
miRNA:   3'- -AGGGCUc--CUCUGCGCa---GCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 99978 0.8 0.213079
Target:  5'- cCCCGAGGAGACGggagagcggauCGUCGGC-GAGGGc -3'
miRNA:   3'- aGGGCUCCUCUGC-----------GCAGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 57027 0.78 0.297485
Target:  5'- -aCCGGGGGGAgcggaggcCGCGUccgaCGACCGGGGGg -3'
miRNA:   3'- agGGCUCCUCU--------GCGCA----GCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 25921 0.77 0.330879
Target:  5'- gUCCaUGAGGucGAugUGCGUCGGCCGGGGGc -3'
miRNA:   3'- -AGG-GCUCCu-CU--GCGCAGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 99016 0.77 0.344988
Target:  5'- cCCCGAuaGGGCGCGUCGGC-GAGGGc -3'
miRNA:   3'- aGGGCUccUCUGCGCAGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 166008 0.76 0.373726
Target:  5'- cUCCCGAcggcuccGGGGACGCGUucggCGGCCGuuccGGGg -3'
miRNA:   3'- -AGGGCU-------CCUCUGCGCA----GCUGGCu---CCC- -5'
8945 5' -59.6 NC_002512.2 + 85559 0.76 0.359525
Target:  5'- gCUCGAGGAGGCGCGggagcgggagCGGCCGGGa- -3'
miRNA:   3'- aGGGCUCCUCUGCGCa---------GCUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 124793 0.75 0.413682
Target:  5'- aCCCGGGGAGACaCGUCGACCcGAc-- -3'
miRNA:   3'- aGGGCUCCUCUGcGCAGCUGG-CUccc -5'
8945 5' -59.6 NC_002512.2 + 147279 0.75 0.421819
Target:  5'- aCCCG-GGAcgccGCGCGUCGuucCCGGGGGg -3'
miRNA:   3'- aGGGCuCCUc---UGCGCAGCu--GGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 14043 0.75 0.446799
Target:  5'- uUCCCGAaggcGGcGGCGCGUucCGGCCGGGaGGg -3'
miRNA:   3'- -AGGGCU----CCuCUGCGCA--GCUGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 215046 0.74 0.469098
Target:  5'- gUCCCGAGGAGcucaccgucgucgGCgGCGUCuaccgcgucggcggGACCGAGGa -3'
miRNA:   3'- -AGGGCUCCUC-------------UG-CGCAG--------------CUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 142050 0.74 0.490178
Target:  5'- gCCgCGAGGGcccGACGCc-CGGCCGGGGGa -3'
miRNA:   3'- aGG-GCUCCU---CUGCGcaGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 101645 0.73 0.535417
Target:  5'- gCUCGAGGGGAgCGCGgCGGCCGcGGa -3'
miRNA:   3'- aGGGCUCCUCU-GCGCaGCUGGCuCCc -5'
8945 5' -59.6 NC_002512.2 + 226180 0.73 0.49909
Target:  5'- aCCCGGGGAGcgacCGgGUCGACCuccgucGGGGa -3'
miRNA:   3'- aGGGCUCCUCu---GCgCAGCUGGc-----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 75039 0.73 0.49909
Target:  5'- --aCGAGGGGACGCa-CGACgGAGGGc -3'
miRNA:   3'- aggGCUCCUCUGCGcaGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 142275 0.73 0.508075
Target:  5'- gUCCGGgccGGGGACgGCGUCGACgGGGGa -3'
miRNA:   3'- aGGGCU---CCUCUG-CGCAGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 86334 0.73 0.517126
Target:  5'- cCCgCGGGGAGACGCG-CGGCCGccGa -3'
miRNA:   3'- aGG-GCUCCUCUGCGCaGCUGGCucCc -5'
8945 5' -59.6 NC_002512.2 + 196183 0.72 0.55393
Target:  5'- gCCCGAGGGGGCGa--CGGCCGGGu- -3'
miRNA:   3'- aGGGCUCCUCUGCgcaGCUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 8189 0.72 0.600934
Target:  5'- aCCCGAGGccgaGCGUCG-CCGGGcGGg -3'
miRNA:   3'- aGGGCUCCucugCGCAGCuGGCUC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.