Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8945 | 5' | -59.6 | NC_002512.2 | + | 201760 | 0.72 | 0.600934 |
Target: 5'- aUCCCG-GGGGACGgGagGGaCGAGGGu -3' miRNA: 3'- -AGGGCuCCUCUGCgCagCUgGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 195087 | 0.72 | 0.572628 |
Target: 5'- aCUCGAGGGGuCGa---GGCCGAGGGg -3' miRNA: 3'- aGGGCUCCUCuGCgcagCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 225782 | 0.72 | 0.563258 |
Target: 5'- uUCCCGAGGcugcgccggccGGGcCGCGggCGGCCGGGuGGc -3' miRNA: 3'- -AGGGCUCC-----------UCU-GCGCa-GCUGGCUC-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 22309 | 0.72 | 0.55393 |
Target: 5'- gCCagggagaGGGGAGACGCGaggGACgCGAGGGa -3' miRNA: 3'- aGGg------CUCCUCUGCGCag-CUG-GCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 8189 | 0.72 | 0.600934 |
Target: 5'- aCCCGAGGccgaGCGUCG-CCGGGcGGg -3' miRNA: 3'- aGGGCUCCucugCGCAGCuGGCUC-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 204801 | 0.71 | 0.638924 |
Target: 5'- gCCCG-GGAGGucCGCGUC--CCGGGGGc -3' miRNA: 3'- aGGGCuCCUCU--GCGCAGcuGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 109018 | 0.71 | 0.657917 |
Target: 5'- cCUCGAGGggcGGGCGgggaCGagGACCGGGGGg -3' miRNA: 3'- aGGGCUCC---UCUGC----GCagCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 81831 | 0.71 | 0.619913 |
Target: 5'- cUCCGAGaGGACGaCGaCGAgCGAGGGg -3' miRNA: 3'- aGGGCUCcUCUGC-GCaGCUgGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 77200 | 0.71 | 0.619913 |
Target: 5'- -aUCGAGGAGGCcccccuGCGUCGAgCGAccGGGa -3' miRNA: 3'- agGGCUCCUCUG------CGCAGCUgGCU--CCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 77190 | 0.71 | 0.619913 |
Target: 5'- cCCCGAccGGGGACGCGacgaGACCGGGc- -3' miRNA: 3'- aGGGCU--CCUCUGCGCag--CUGGCUCcc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 99888 | 0.71 | 0.610417 |
Target: 5'- aCCgGgAGGAGGCGCGgcccgUCGagggcGCCGGGGGc -3' miRNA: 3'- aGGgC-UCCUCUGCGC-----AGC-----UGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 8785 | 0.71 | 0.619913 |
Target: 5'- cUCCCGAGGAGGCGC-----CgGAGGGc -3' miRNA: 3'- -AGGGCUCCUCUGCGcagcuGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 58909 | 0.71 | 0.619913 |
Target: 5'- -aCCGAcGGAGAuaaaauugagcCGCGagUCGAUCGAGGGc -3' miRNA: 3'- agGGCU-CCUCU-----------GCGC--AGCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 78 | 0.71 | 0.629418 |
Target: 5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3' miRNA: 3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 229482 | 0.71 | 0.629418 |
Target: 5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3' miRNA: 3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 24846 | 0.71 | 0.638924 |
Target: 5'- gCCCGcGGccggucggcggcGGACGCGgcccCGACCGAGGc -3' miRNA: 3'- aGGGCuCC------------UCUGCGCa---GCUGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 70686 | 0.71 | 0.645576 |
Target: 5'- uUCCCGGGGAccggccgggcggggGACGgGggGACgGGGGGa -3' miRNA: 3'- -AGGGCUCCU--------------CUGCgCagCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 31803 | 0.71 | 0.648426 |
Target: 5'- --aCGGGGAGACGcCGgggcgCGGUCGAGGGg -3' miRNA: 3'- aggGCUCCUCUGC-GCa----GCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 45045 | 0.71 | 0.657917 |
Target: 5'- aCCCGAGGAuGAgCGaGUCGAUgGAGGu -3' miRNA: 3'- aGGGCUCCU-CU-GCgCAGCUGgCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 127034 | 0.71 | 0.638924 |
Target: 5'- cCCCGgucGGGAuACGCGUacggCGGCgGAGGGa -3' miRNA: 3'- aGGGC---UCCUcUGCGCA----GCUGgCUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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