Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8945 | 5' | -59.6 | NC_002512.2 | + | 131530 | 0.66 | 0.902609 |
Target: 5'- gCCgGAGGgAGACGa---GGCgGAGGGg -3' miRNA: 3'- aGGgCUCC-UCUGCgcagCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 76935 | 0.66 | 0.890486 |
Target: 5'- aCCCGAccGGGGAcCGCucccgcugacCGACCGGGGa -3' miRNA: 3'- aGGGCU--CCUCU-GCGca--------GCUGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 135323 | 0.66 | 0.890486 |
Target: 5'- cCCCGAGGucg-GCGUCaGCCGcgccGGGGu -3' miRNA: 3'- aGGGCUCCucugCGCAGcUGGC----UCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 17881 | 0.66 | 0.890486 |
Target: 5'- gCCCGGGG-GACGUGauaggCGGcggcggccCCGAGGa -3' miRNA: 3'- aGGGCUCCuCUGCGCa----GCU--------GGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 53842 | 0.66 | 0.896647 |
Target: 5'- aCCCGGGGGcGGCGCcggGagGAgaGGGGGa -3' miRNA: 3'- aGGGCUCCU-CUGCG---CagCUggCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 60846 | 0.66 | 0.896647 |
Target: 5'- gCCCGAGGAGAUGCcggCG-CCGcucGcGGa -3' miRNA: 3'- aGGGCUCCUCUGCGca-GCuGGCu--C-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 97419 | 0.66 | 0.873559 |
Target: 5'- gCCgGGGaGAGACGCG-CGcuccccggacccgccGCCGGGGa -3' miRNA: 3'- aGGgCUC-CUCUGCGCaGC---------------UGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 95655 | 0.66 | 0.884129 |
Target: 5'- gCCUGAGGAGgaACGcCGUgGgGCUGuAGGGg -3' miRNA: 3'- aGGGCUCCUC--UGC-GCAgC-UGGC-UCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 128174 | 0.66 | 0.884129 |
Target: 5'- gCCCG-GG-GACGagGUCG-CCGAGcGGg -3' miRNA: 3'- aGGGCuCCuCUGCg-CAGCuGGCUC-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 13718 | 0.66 | 0.884129 |
Target: 5'- aUCCCGA---GACGCGggaGcCUGAGGGg -3' miRNA: 3'- -AGGGCUccuCUGCGCag-CuGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 15171 | 0.66 | 0.896647 |
Target: 5'- gCCCGGGcGGGCGCugaGUCaGCCuGGGGa -3' miRNA: 3'- aGGGCUCcUCUGCG---CAGcUGGcUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 121855 | 0.66 | 0.896647 |
Target: 5'- --gCGGGGAGGacgGCGgCGGauCCGAGGGg -3' miRNA: 3'- aggGCUCCUCUg--CGCaGCU--GGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 227233 | 0.66 | 0.896647 |
Target: 5'- -aCCG-GGAGGCGCGgCGGaCGGGcGGg -3' miRNA: 3'- agGGCuCCUCUGCGCaGCUgGCUC-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 192554 | 0.66 | 0.902609 |
Target: 5'- uUCCCGAca--GCGCGUCcguGGCCGGGGc -3' miRNA: 3'- -AGGGCUccucUGCGCAG---CUGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 108854 | 0.66 | 0.896647 |
Target: 5'- gCCCaGAGGucGCGC-UCGcCCGAGGu -3' miRNA: 3'- aGGG-CUCCucUGCGcAGCuGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 107169 | 0.66 | 0.890486 |
Target: 5'- gCCCG-GGAGG-GCGUUGauGCCGugcGGGa -3' miRNA: 3'- aGGGCuCCUCUgCGCAGC--UGGCu--CCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 91909 | 0.66 | 0.902609 |
Target: 5'- cUCCUGGGGcggcGGCGCGccgucggCGGCCGAcuuggucuuGGGc -3' miRNA: 3'- -AGGGCUCCu---CUGCGCa------GCUGGCU---------CCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 150047 | 0.66 | 0.896647 |
Target: 5'- -gCCGGGGAcGACGgGgCGGgaGGGGGg -3' miRNA: 3'- agGGCUCCU-CUGCgCaGCUggCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 39951 | 0.66 | 0.890486 |
Target: 5'- -aCCGAGGGGGaGCaGUCGccGCCGAGa- -3' miRNA: 3'- agGGCUCCUCUgCG-CAGC--UGGCUCcc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 6331 | 0.66 | 0.896647 |
Target: 5'- cCCgCGGGGggaccGGGCGCGg-GGCCGGcGGGc -3' miRNA: 3'- aGG-GCUCC-----UCUGCGCagCUGGCU-CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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