miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 128174 0.66 0.884129
Target:  5'- gCCCG-GG-GACGagGUCG-CCGAGcGGg -3'
miRNA:   3'- aGGGCuCCuCUGCg-CAGCuGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 13718 0.66 0.884129
Target:  5'- aUCCCGA---GACGCGggaGcCUGAGGGg -3'
miRNA:   3'- -AGGGCUccuCUGCGCag-CuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 17881 0.66 0.890486
Target:  5'- gCCCGGGG-GACGUGauaggCGGcggcggccCCGAGGa -3'
miRNA:   3'- aGGGCUCCuCUGCGCa----GCU--------GGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 228441 0.66 0.870841
Target:  5'- --aCGGGGAGgagcggacGCGCGUauauaGacGCCGAGGGg -3'
miRNA:   3'- aggGCUCCUC--------UGCGCAg----C--UGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 102927 0.67 0.834474
Target:  5'- cCCCuacuGGGAG-CGCcagaggGUCGACCGGGGc -3'
miRNA:   3'- aGGGc---UCCUCuGCG------CAGCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 226744 0.67 0.825917
Target:  5'- gUCCCGGagacggcGGAGGCGUG-CGGCCGGu-- -3'
miRNA:   3'- -AGGGCU-------CCUCUGCGCaGCUGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 50708 0.67 0.826702
Target:  5'- gCCCGAGGAcccGGCGaagGUCG-CC-AGGGa -3'
miRNA:   3'- aGGGCUCCU---CUGCg--CAGCuGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 57998 0.67 0.826702
Target:  5'- gUCCCGGGGAcGAgGgGgacGCCGAGGa -3'
miRNA:   3'- -AGGGCUCCU-CUgCgCagcUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 88170 0.67 0.826702
Target:  5'- gCCCG-GGAcGGuCGCGUCcggGAUCGAGGa -3'
miRNA:   3'- aGGGCuCCU-CU-GCGCAG---CUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 129091 0.67 0.826702
Target:  5'- cCCCGAGGAcgGGCgGCGUCuGCgGcGGGc -3'
miRNA:   3'- aGGGCUCCU--CUG-CGCAGcUGgCuCCC- -5'
8945 5' -59.6 NC_002512.2 + 135972 0.67 0.842088
Target:  5'- gCCCGucuGGGAgGGCGCGggGuuCGGGGGa -3'
miRNA:   3'- aGGGC---UCCU-CUGCGCagCugGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 123138 0.67 0.82983
Target:  5'- gUCCCG-GGGGACGgGgcggcggcgccgcgaUCGccGCCGAGGc -3'
miRNA:   3'- -AGGGCuCCUCUGCgC---------------AGC--UGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 147663 0.67 0.863918
Target:  5'- cUCCuCGcGGGGGCGCGaCGAC--GGGGa -3'
miRNA:   3'- -AGG-GCuCCUCUGCGCaGCUGgcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 47953 0.67 0.856815
Target:  5'- gCCCGAGGAacgagGugGCGgaGGCCGcGGa -3'
miRNA:   3'- aGGGCUCCU-----CugCGCagCUGGCuCCc -5'
8945 5' -59.6 NC_002512.2 + 47494 0.67 0.863918
Target:  5'- -gCCGGGGAGACGC--UGGCC-AGGa -3'
miRNA:   3'- agGGCUCCUCUGCGcaGCUGGcUCCc -5'
8945 5' -59.6 NC_002512.2 + 45247 0.67 0.863918
Target:  5'- gCCCGcGGAcuCGcCGUCGGCCGccggcGGGGc -3'
miRNA:   3'- aGGGCuCCUcuGC-GCAGCUGGC-----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 134207 0.67 0.859678
Target:  5'- gCCgGAGGcccggcGGACGCG-CGcucacgagaggcuguGCCGGGGGc -3'
miRNA:   3'- aGGgCUCC------UCUGCGCaGC---------------UGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 49460 0.67 0.856815
Target:  5'- gCCCGGGGcgccgucaccgaGGACGaCuUCGACuacgCGAGGGa -3'
miRNA:   3'- aGGGCUCC------------UCUGC-GcAGCUG----GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 97362 0.67 0.849537
Target:  5'- gCCCGcggagcGGGGAcCGCGgCGGCCGgagacGGGGg -3'
miRNA:   3'- aGGGCu-----CCUCU-GCGCaGCUGGC-----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 79964 0.67 0.849537
Target:  5'- -gCCGucGGAaGCG-GUCGGCCGAGGa -3'
miRNA:   3'- agGGCu-CCUcUGCgCAGCUGGCUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.