miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 60846 0.66 0.896647
Target:  5'- gCCCGAGGAGAUGCcggCG-CCGcucGcGGa -3'
miRNA:   3'- aGGGCUCCUCUGCGca-GCuGGCu--C-CC- -5'
8945 5' -59.6 NC_002512.2 + 70686 0.71 0.645576
Target:  5'- uUCCCGGGGAccggccgggcggggGACGgGggGACgGGGGGa -3'
miRNA:   3'- -AGGGCUCCU--------------CUGCgCagCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 73966 0.7 0.704964
Target:  5'- cUCCCGAagcuGGAgGACGCGUCGgcGCCGGa-- -3'
miRNA:   3'- -AGGGCU----CCU-CUGCGCAGC--UGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 75039 0.73 0.49909
Target:  5'- --aCGAGGGGACGCa-CGACgGAGGGc -3'
miRNA:   3'- aggGCUCCUCUGCGcaGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 75779 0.69 0.76839
Target:  5'- gCCCGGGaGGACGgGgcaGAgCGGGGGa -3'
miRNA:   3'- aGGGCUCcUCUGCgCag-CUgGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 76935 0.66 0.890486
Target:  5'- aCCCGAccGGGGAcCGCucccgcugacCGACCGGGGa -3'
miRNA:   3'- aGGGCU--CCUCU-GCGca--------GCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 77043 0.68 0.774493
Target:  5'- gUUCCGccuGGGGAcCGCGaggcccgauccuuuUCGACCGGGGa -3'
miRNA:   3'- -AGGGCu--CCUCU-GCGC--------------AGCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 77190 0.71 0.619913
Target:  5'- cCCCGAccGGGGACGCGacgaGACCGGGc- -3'
miRNA:   3'- aGGGCU--CCUCUGCGCag--CUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 77200 0.71 0.619913
Target:  5'- -aUCGAGGAGGCcccccuGCGUCGAgCGAccGGGa -3'
miRNA:   3'- agGGCUCCUCUG------CGCAGCUgGCU--CCC- -5'
8945 5' -59.6 NC_002512.2 + 78120 0.66 0.884129
Target:  5'- cUCCCGGGGAGAUGUGUgauauauaACCGAa-- -3'
miRNA:   3'- -AGGGCUCCUCUGCGCAgc------UGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 79964 0.67 0.849537
Target:  5'- -gCCGucGGAaGCG-GUCGGCCGAGGa -3'
miRNA:   3'- agGGCu-CCUcUGCgCAGCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 80673 0.66 0.883483
Target:  5'- gUCCCGcggcggcggcgacGGGGGcgaGCGgCGuCCGGGGGg -3'
miRNA:   3'- -AGGGC-------------UCCUCug-CGCaGCuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 80796 0.7 0.708683
Target:  5'- gCgCGAGGAGgaggagcgcgcgcgcGCcucgGCGUCGGCgGAGGGg -3'
miRNA:   3'- aGgGCUCCUC---------------UG----CGCAGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 81476 0.67 0.834474
Target:  5'- gUCCCGcAGGAGGCacgGCagGUCGGCC-AGGu -3'
miRNA:   3'- -AGGGC-UCCUCUG---CG--CAGCUGGcUCCc -5'
8945 5' -59.6 NC_002512.2 + 81831 0.71 0.619913
Target:  5'- cUCCGAGaGGACGaCGaCGAgCGAGGGg -3'
miRNA:   3'- aGGGCUCcUCUGC-GCaGCUgGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 81972 0.69 0.768391
Target:  5'- cCCCGGGcGGGugGUGgCGGCgGGGGc -3'
miRNA:   3'- aGGGCUC-CUCugCGCaGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 83217 0.68 0.818777
Target:  5'- --gCGGGGGGA-GCGUCGGucCCGGGGa -3'
miRNA:   3'- aggGCUCCUCUgCGCAGCU--GGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 85332 0.66 0.870842
Target:  5'- gUCgCCGGuuGGAGcuuccGCGCGUCGcACaCGAGGa -3'
miRNA:   3'- -AG-GGCU--CCUC-----UGCGCAGC-UG-GCUCCc -5'
8945 5' -59.6 NC_002512.2 + 85559 0.76 0.359525
Target:  5'- gCUCGAGGAGGCGCGggagcgggagCGGCCGGGa- -3'
miRNA:   3'- aGGGCUCCUCUGCGCa---------GCUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 86219 0.66 0.884129
Target:  5'- gCCCGgcuucggggaGGGGGACGagGagGACCcGGGGGa -3'
miRNA:   3'- aGGGC----------UCCUCUGCg-CagCUGG-CUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.