miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 25921 0.77 0.330879
Target:  5'- gUCCaUGAGGucGAugUGCGUCGGCCGGGGGc -3'
miRNA:   3'- -AGG-GCUCCu-CU--GCGCAGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 27994 0.68 0.818777
Target:  5'- cUUCGAGGAGGuCGCGgu-ACCGuGGGa -3'
miRNA:   3'- aGGGCUCCUCU-GCGCagcUGGCuCCC- -5'
8945 5' -59.6 NC_002512.2 + 31803 0.71 0.648426
Target:  5'- --aCGGGGAGACGcCGgggcgCGGUCGAGGGg -3'
miRNA:   3'- aggGCUCCUCUGC-GCa----GCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 38682 0.67 0.856815
Target:  5'- cCCCGGGGaAGAC-CGagcCGACgGAGGa -3'
miRNA:   3'- aGGGCUCC-UCUGcGCa--GCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 39951 0.66 0.890486
Target:  5'- -aCCGAGGGGGaGCaGUCGccGCCGAGa- -3'
miRNA:   3'- agGGCUCCUCUgCG-CAGC--UGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 43083 0.68 0.794152
Target:  5'- gUCCCGGGGcgcGGCgagcaGCGgggaCGGCuCGAGGGa -3'
miRNA:   3'- -AGGGCUCCu--CUG-----CGCa---GCUG-GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 44271 0.69 0.732613
Target:  5'- -aCCGAcacGGAGACGcCGUUGGCCagGAGGu -3'
miRNA:   3'- agGGCU---CCUCUGC-GCAGCUGG--CUCCc -5'
8945 5' -59.6 NC_002512.2 + 45045 0.71 0.657917
Target:  5'- aCCCGAGGAuGAgCGaGUCGAUgGAGGu -3'
miRNA:   3'- aGGGCUCCU-CU-GCgCAGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 45247 0.67 0.863918
Target:  5'- gCCCGcGGAcuCGcCGUCGGCCGccggcGGGGc -3'
miRNA:   3'- aGGGCuCCUcuGC-GCAGCUGGC-----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 45608 0.7 0.704964
Target:  5'- uUCCCGAucuggaugccGGAGACGCc-CGACagcuugacguaCGAGGGg -3'
miRNA:   3'- -AGGGCU----------CCUCUGCGcaGCUG-----------GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 47494 0.67 0.863918
Target:  5'- -gCCGGGGAGACGC--UGGCC-AGGa -3'
miRNA:   3'- agGGCUCCUCUGCGcaGCUGGcUCCc -5'
8945 5' -59.6 NC_002512.2 + 47953 0.67 0.856815
Target:  5'- gCCCGAGGAacgagGugGCGgaGGCCGcGGa -3'
miRNA:   3'- aGGGCUCCU-----CugCGCagCUGGCuCCc -5'
8945 5' -59.6 NC_002512.2 + 49460 0.67 0.856815
Target:  5'- gCCCGGGGcgccgucaccgaGGACGaCuUCGACuacgCGAGGGa -3'
miRNA:   3'- aGGGCUCC------------UCUGC-GcAGCUG----GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 50708 0.67 0.826702
Target:  5'- gCCCGAGGAcccGGCGaagGUCG-CC-AGGGa -3'
miRNA:   3'- aGGGCUCCU---CUGCg--CAGCuGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 53842 0.66 0.896647
Target:  5'- aCCCGGGGGcGGCGCcggGagGAgaGGGGGa -3'
miRNA:   3'- aGGGCUCCU-CUGCG---CagCUggCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 56452 0.69 0.768391
Target:  5'- cCCCGAGugcgagacGAGGCGCGcgaugcgaUCGACgGAGaGGu -3'
miRNA:   3'- aGGGCUC--------CUCUGCGC--------AGCUGgCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 57027 0.78 0.297485
Target:  5'- -aCCGGGGGGAgcggaggcCGCGUccgaCGACCGGGGGg -3'
miRNA:   3'- agGGCUCCUCU--------GCGCA----GCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 57418 0.69 0.768391
Target:  5'- cCCUGAaaGGuGACGuUGUCGACC-AGGGc -3'
miRNA:   3'- aGGGCU--CCuCUGC-GCAGCUGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 57998 0.67 0.826702
Target:  5'- gUCCCGGGGAcGAgGgGgacGCCGAGGa -3'
miRNA:   3'- -AGGGCUCCU-CUgCgCagcUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 58909 0.71 0.619913
Target:  5'- -aCCGAcGGAGAuaaaauugagcCGCGagUCGAUCGAGGGc -3'
miRNA:   3'- agGGCU-CCUCU-----------GCGC--AGCUGGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.