miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 221841 0.68 0.810706
Target:  5'- aCCCGcGGGGGCGCcUCggGACCGGGa- -3'
miRNA:   3'- aGGGCuCCUCUGCGcAG--CUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 219852 0.67 0.826702
Target:  5'- gCCCGGGGgcggaucgcGGACGgGUgacgaGGCCGGGGu -3'
miRNA:   3'- aGGGCUCC---------UCUGCgCAg----CUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 219789 0.69 0.771884
Target:  5'- gCCCGgccggggacacagauAGGGGACGCGcggggcgCGACaGGGGGu -3'
miRNA:   3'- aGGGC---------------UCCUCUGCGCa------GCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 219688 0.7 0.714243
Target:  5'- gCCCGAGGAcGAggaggaGCGUCGGCgCucGGGg -3'
miRNA:   3'- aGGGCUCCU-CUg-----CGCAGCUG-GcuCCC- -5'
8945 5' -59.6 NC_002512.2 + 218776 0.67 0.826702
Target:  5'- cCCCGuccGGGGACGa---GGCCGAGGcGg -3'
miRNA:   3'- aGGGCu--CCUCUGCgcagCUGGCUCC-C- -5'
8945 5' -59.6 NC_002512.2 + 218093 0.66 0.870841
Target:  5'- gUCCGuGGGGAagcggGCGUCGcGCCcGGGGu -3'
miRNA:   3'- aGGGCuCCUCUg----CGCAGC-UGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 215591 0.7 0.676838
Target:  5'- aCCCGuGGGAGGacaGCGUCGuCCGGGu- -3'
miRNA:   3'- aGGGC-UCCUCUg--CGCAGCuGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 215046 0.74 0.469098
Target:  5'- gUCCCGAGGAGcucaccgucgucgGCgGCGUCuaccgcgucggcggGACCGAGGa -3'
miRNA:   3'- -AGGGCUCCUC-------------UG-CGCAG--------------CUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 214261 0.68 0.802495
Target:  5'- -gCCGAGGAGuucCGCuGUCGccuggccuggcCCGAGGGc -3'
miRNA:   3'- agGGCUCCUCu--GCG-CAGCu----------GGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 213014 0.66 0.884129
Target:  5'- gCCCGGGGcccucucgAGGUGCGUCcGCCGgcugcGGGGg -3'
miRNA:   3'- aGGGCUCC--------UCUGCGCAGcUGGC-----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 211934 0.68 0.810706
Target:  5'- cCCCGAcGGGACGUccGUgGACgaGAGGGu -3'
miRNA:   3'- aGGGCUcCUCUGCG--CAgCUGg-CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 208877 0.66 0.87758
Target:  5'- aCUCGGGGGGACGgGaggGGCCGGGa- -3'
miRNA:   3'- aGGGCUCCUCUGCgCag-CUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 208354 0.7 0.686254
Target:  5'- cCCCGAGGAGcagguGCGUuUCGACgaCGAGGu -3'
miRNA:   3'- aGGGCUCCUC-----UGCGcAGCUG--GCUCCc -5'
8945 5' -59.6 NC_002512.2 + 205640 0.68 0.802495
Target:  5'- gCCCGcGGGGGACGcCGUCGGCgGGc-- -3'
miRNA:   3'- aGGGC-UCCUCUGC-GCAGCUGgCUccc -5'
8945 5' -59.6 NC_002512.2 + 205098 0.69 0.76839
Target:  5'- gUCCUcGGGGGGCGCGccCGGacCCGAGcGGg -3'
miRNA:   3'- -AGGGcUCCUCUGCGCa-GCU--GGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 204801 0.71 0.638924
Target:  5'- gCCCG-GGAGGucCGCGUC--CCGGGGGc -3'
miRNA:   3'- aGGGCuCCUCU--GCGCAGcuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 204761 0.81 0.203523
Target:  5'- aUCCCGGccuGGGGCGCGgggaCGACCGGGGGa -3'
miRNA:   3'- -AGGGCUc--CUCUGCGCa---GCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 203108 0.66 0.884129
Target:  5'- gUCUCGaAGGccAGG-GCGUCGGCCGAGucguGGg -3'
miRNA:   3'- -AGGGC-UCC--UCUgCGCAGCUGGCUC----CC- -5'
8945 5' -59.6 NC_002512.2 + 201760 0.72 0.600934
Target:  5'- aUCCCG-GGGGACGgGagGGaCGAGGGu -3'
miRNA:   3'- -AGGGCuCCUCUGCgCagCUgGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 201458 0.68 0.777092
Target:  5'- cCUCGAGGuGGucCcCGUCGGCCGGGGu -3'
miRNA:   3'- aGGGCUCCuCU--GcGCAGCUGGCUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.