miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 229607 0.68 0.794151
Target:  5'- gCCCGGgcGGAGAgggaGCGggGACCGaAGGGc -3'
miRNA:   3'- aGGGCU--CCUCUg---CGCagCUGGC-UCCC- -5'
8945 5' -59.6 NC_002512.2 + 229542 0.7 0.695633
Target:  5'- ---aGAGGAGGCG-GUCGGCgGAGGa -3'
miRNA:   3'- agggCUCCUCUGCgCAGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 229482 0.71 0.629418
Target:  5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3'
miRNA:   3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 228481 0.67 0.834474
Target:  5'- -aCCGAGGGGAC-CGaaGACgCGgAGGGg -3'
miRNA:   3'- agGGCUCCUCUGcGCagCUG-GC-UCCC- -5'
8945 5' -59.6 NC_002512.2 + 228441 0.66 0.870841
Target:  5'- --aCGGGGAGgagcggacGCGCGUauauaGacGCCGAGGGg -3'
miRNA:   3'- aggGCUCCUC--------UGCGCAg----C--UGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 228405 0.67 0.842088
Target:  5'- gUCCG-GGGGACGgGgCG-CUGGGGGg -3'
miRNA:   3'- aGGGCuCCUCUGCgCaGCuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 228105 0.67 0.832932
Target:  5'- --gCGAGGAGG-GCGUCGGCCGcaacgucgugcuGGGc -3'
miRNA:   3'- aggGCUCCUCUgCGCAGCUGGCu-----------CCC- -5'
8945 5' -59.6 NC_002512.2 + 227969 0.67 0.825916
Target:  5'- gCCggaGAGGAGggccccgGCGcCGagGGCCGAGGGc -3'
miRNA:   3'- aGGg--CUCCUC-------UGC-GCagCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 227488 0.69 0.759585
Target:  5'- -gCCGcgaggagguAGGAGACGcCG-CGACCcGGGGGg -3'
miRNA:   3'- agGGC---------UCCUCUGC-GCaGCUGG-CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 227314 0.7 0.667389
Target:  5'- -aUgGGGGAGACGCGcCGGcgcCCGAGGa -3'
miRNA:   3'- agGgCUCCUCUGCGCaGCU---GGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 227233 0.66 0.896647
Target:  5'- -aCCG-GGAGGCGCGgCGGaCGGGcGGg -3'
miRNA:   3'- agGGCuCCUCUGCGCaGCUgGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 226744 0.67 0.825917
Target:  5'- gUCCCGGagacggcGGAGGCGUG-CGGCCGGu-- -3'
miRNA:   3'- -AGGGCU-------CCUCUGCGCaGCUGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 226582 0.7 0.704964
Target:  5'- cCCCGgccAGGAGG-GCG-CGGCCcGGGGGa -3'
miRNA:   3'- aGGGC---UCCUCUgCGCaGCUGG-CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 226180 0.73 0.49909
Target:  5'- aCCCGGGGAGcgacCGgGUCGACCuccgucGGGGa -3'
miRNA:   3'- aGGGCUCCUCu---GCgCAGCUGGc-----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 225906 1.11 0.002227
Target:  5'- cUCCCGAGGAGACGCGUCGACCGAGGGg -3'
miRNA:   3'- -AGGGCUCCUCUGCGCAGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 225782 0.72 0.563258
Target:  5'- uUCCCGAGGcugcgccggccGGGcCGCGggCGGCCGGGuGGc -3'
miRNA:   3'- -AGGGCUCC-----------UCU-GCGCa-GCUGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 224586 0.7 0.674006
Target:  5'- aCCCGGGuuacgucagggcgcGGGACGCGgugcCGACCGGgcucGGGg -3'
miRNA:   3'- aGGGCUC--------------CUCUGCGCa---GCUGGCU----CCC- -5'
8945 5' -59.6 NC_002512.2 + 223704 0.69 0.723462
Target:  5'- aCCCGAaGAGuCGUugGaCGACCGGGGGc -3'
miRNA:   3'- aGGGCUcCUCuGCG--CaGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 223086 0.69 0.76839
Target:  5'- aCCCGGGuccgcGGCuGCGUCGACgggGAGGGg -3'
miRNA:   3'- aGGGCUCcu---CUG-CGCAGCUGg--CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 222631 0.67 0.861806
Target:  5'- aUCCCGAcGGAcgccgcuccgccgcGACGgcCGgccgGGCCGAGGGg -3'
miRNA:   3'- -AGGGCU-CCU--------------CUGC--GCag--CUGGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.