miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 78 0.71 0.629418
Target:  5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3'
miRNA:   3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 136 0.7 0.66739
Target:  5'- gCgaGAGGAGGCG-GUCGGCgGAGGa -3'
miRNA:   3'- aGggCUCCUCUGCgCAGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 204 0.68 0.794151
Target:  5'- gCCCGGgcGGAGAgggaGCGggGACCGaAGGGc -3'
miRNA:   3'- aGGGCU--CCUCUg---CGCagCUGGC-UCCC- -5'
8945 5' -59.6 NC_002512.2 + 3469 0.68 0.818777
Target:  5'- gUCCCGcguccGGAGACGCG--GACgCGAcGGGu -3'
miRNA:   3'- -AGGGCu----CCUCUGCGCagCUG-GCU-CCC- -5'
8945 5' -59.6 NC_002512.2 + 3771 0.7 0.686254
Target:  5'- gCCCGAGGAGACGgacccggaGUCGgACCGGa-- -3'
miRNA:   3'- aGGGCUCCUCUGCg-------CAGC-UGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 6331 0.66 0.896647
Target:  5'- cCCgCGGGGggaccGGGCGCGg-GGCCGGcGGGc -3'
miRNA:   3'- aGG-GCUCC-----UCUGCGCagCUGGCU-CCC- -5'
8945 5' -59.6 NC_002512.2 + 7424 0.68 0.794152
Target:  5'- aCCgCGAGGGccGGCGCGagguuggccgCGGCCcGGGGGa -3'
miRNA:   3'- aGG-GCUCCU--CUGCGCa---------GCUGG-CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 7718 0.68 0.785681
Target:  5'- gCCCG-GGAGuAgGCGUCGGgauagcgguccUCGGGGGc -3'
miRNA:   3'- aGGGCuCCUC-UgCGCAGCU-----------GGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 8047 0.66 0.870842
Target:  5'- gUCCCGAGGcGcccccGCGgGUCGgacGCCGAGa- -3'
miRNA:   3'- -AGGGCUCCuC-----UGCgCAGC---UGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 8189 0.72 0.600934
Target:  5'- aCCCGAGGccgaGCGUCG-CCGGGcGGg -3'
miRNA:   3'- aGGGCUCCucugCGCAGCuGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 8785 0.71 0.619913
Target:  5'- cUCCCGAGGAGGCGC-----CgGAGGGc -3'
miRNA:   3'- -AGGGCUCCUCUGCGcagcuGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 9941 0.69 0.729875
Target:  5'- aCCCG-GGGGauccacccucccccGCGCGUCGACgGAGa- -3'
miRNA:   3'- aGGGCuCCUC--------------UGCGCAGCUGgCUCcc -5'
8945 5' -59.6 NC_002512.2 + 13718 0.66 0.884129
Target:  5'- aUCCCGA---GACGCGggaGcCUGAGGGg -3'
miRNA:   3'- -AGGGCUccuCUGCGCag-CuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 14043 0.75 0.446799
Target:  5'- uUCCCGAaggcGGcGGCGCGUucCGGCCGGGaGGg -3'
miRNA:   3'- -AGGGCU----CCuCUGCGCA--GCUGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 15171 0.66 0.896647
Target:  5'- gCCCGGGcGGGCGCugaGUCaGCCuGGGGa -3'
miRNA:   3'- aGGGCUCcUCUGCG---CAGcUGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 15992 0.69 0.741689
Target:  5'- cCCCGGGGAGcagaacACGagauagGUCGGCCGccggguGGGGa -3'
miRNA:   3'- aGGGCUCCUC------UGCg-----CAGCUGGC------UCCC- -5'
8945 5' -59.6 NC_002512.2 + 17881 0.66 0.890486
Target:  5'- gCCCGGGG-GACGUGauaggCGGcggcggccCCGAGGa -3'
miRNA:   3'- aGGGCUCCuCUGCGCa----GCU--------GGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 22309 0.72 0.55393
Target:  5'- gCCagggagaGGGGAGACGCGaggGACgCGAGGGa -3'
miRNA:   3'- aGGg------CUCCUCUGCGCag-CUG-GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 22516 0.67 0.856095
Target:  5'- -aUCGuGGGGACGCcgaacgcgucgguGUCGAUCGGGGc -3'
miRNA:   3'- agGGCuCCUCUGCG-------------CAGCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 24846 0.71 0.638924
Target:  5'- gCCCGcGGccggucggcggcGGACGCGgcccCGACCGAGGc -3'
miRNA:   3'- aGGGCuCC------------UCUGCGCa---GCUGGCUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.