miRNA display CGI


Results 41 - 60 of 193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 14043 0.75 0.446799
Target:  5'- uUCCCGAaggcGGcGGCGCGUucCGGCCGGGaGGg -3'
miRNA:   3'- -AGGGCU----CCuCUGCGCA--GCUGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 124793 0.75 0.413682
Target:  5'- aCCCGGGGAGACaCGUCGACCcGAc-- -3'
miRNA:   3'- aGGGCUCCUCUGcGCAGCUGG-CUccc -5'
8945 5' -59.6 NC_002512.2 + 85559 0.76 0.359525
Target:  5'- gCUCGAGGAGGCGCGggagcgggagCGGCCGGGa- -3'
miRNA:   3'- aGGGCUCCUCUGCGCa---------GCUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 99016 0.77 0.344988
Target:  5'- cCCCGAuaGGGCGCGUCGGC-GAGGGc -3'
miRNA:   3'- aGGGCUccUCUGCGCAGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 25921 0.77 0.330879
Target:  5'- gUCCaUGAGGucGAugUGCGUCGGCCGGGGGc -3'
miRNA:   3'- -AGG-GCUCCu-CU--GCGCAGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 8785 0.71 0.619913
Target:  5'- cUCCCGAGGAGGCGC-----CgGAGGGc -3'
miRNA:   3'- -AGGGCUCCUCUGCGcagcuGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 77190 0.71 0.619913
Target:  5'- cCCCGAccGGGGACGCGacgaGACCGGGc- -3'
miRNA:   3'- aGGGCU--CCUCUGCGCag--CUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 73966 0.7 0.704964
Target:  5'- cUCCCGAagcuGGAgGACGCGUCGgcGCCGGa-- -3'
miRNA:   3'- -AGGGCU----CCU-CUGCGCAGC--UGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 45608 0.7 0.704964
Target:  5'- uUCCCGAucuggaugccGGAGACGCc-CGACagcuugacguaCGAGGGg -3'
miRNA:   3'- -AGGGCU----------CCUCUGCGcaGCUG-----------GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 229542 0.7 0.695633
Target:  5'- ---aGAGGAGGCG-GUCGGCgGAGGa -3'
miRNA:   3'- agggCUCCUCUGCgCAGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 98316 0.7 0.686254
Target:  5'- uUCCCGAGG-GGCuCGg-GGCCGGGGa -3'
miRNA:   3'- -AGGGCUCCuCUGcGCagCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 3771 0.7 0.686254
Target:  5'- gCCCGAGGAGACGgacccggaGUCGgACCGGa-- -3'
miRNA:   3'- aGGGCUCCUCUGCg-------CAGC-UGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 136 0.7 0.66739
Target:  5'- gCgaGAGGAGGCG-GUCGGCgGAGGa -3'
miRNA:   3'- aGggCUCCUCUGCgCAGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 45045 0.71 0.657917
Target:  5'- aCCCGAGGAuGAgCGaGUCGAUgGAGGu -3'
miRNA:   3'- aGGGCUCCU-CU-GCgCAGCUGgCUCCc -5'
8945 5' -59.6 NC_002512.2 + 31803 0.71 0.648426
Target:  5'- --aCGGGGAGACGcCGgggcgCGGUCGAGGGg -3'
miRNA:   3'- aggGCUCCUCUGC-GCa----GCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 70686 0.71 0.645576
Target:  5'- uUCCCGGGGAccggccgggcggggGACGgGggGACgGGGGGa -3'
miRNA:   3'- -AGGGCUCCU--------------CUGCgCagCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 24846 0.71 0.638924
Target:  5'- gCCCGcGGccggucggcggcGGACGCGgcccCGACCGAGGc -3'
miRNA:   3'- aGGGCuCC------------UCUGCGCa---GCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 229482 0.71 0.629418
Target:  5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3'
miRNA:   3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 78 0.71 0.629418
Target:  5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3'
miRNA:   3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 58909 0.71 0.619913
Target:  5'- -aCCGAcGGAGAuaaaauugagcCGCGagUCGAUCGAGGGc -3'
miRNA:   3'- agGGCU-CCUCU-----------GCGC--AGCUGGCUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.