miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 39951 0.66 0.890486
Target:  5'- -aCCGAGGGGGaGCaGUCGccGCCGAGa- -3'
miRNA:   3'- agGGCUCCUCUgCG-CAGC--UGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 107169 0.66 0.890486
Target:  5'- gCCCG-GGAGG-GCGUUGauGCCGugcGGGa -3'
miRNA:   3'- aGGGCuCCUCUgCGCAGC--UGGCu--CCC- -5'
8945 5' -59.6 NC_002512.2 + 17881 0.66 0.890486
Target:  5'- gCCCGGGG-GACGUGauaggCGGcggcggccCCGAGGa -3'
miRNA:   3'- aGGGCUCCuCUGCGCa----GCU--------GGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 156454 0.66 0.890486
Target:  5'- cUCCGGGGGcGGCGgGg-GACuCGGGGGc -3'
miRNA:   3'- aGGGCUCCU-CUGCgCagCUG-GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 203108 0.66 0.884129
Target:  5'- gUCUCGaAGGccAGG-GCGUCGGCCGAGucguGGg -3'
miRNA:   3'- -AGGGC-UCC--UCUgCGCAGCUGGCUC----CC- -5'
8945 5' -59.6 NC_002512.2 + 213014 0.66 0.884129
Target:  5'- gCCCGGGGcccucucgAGGUGCGUCcGCCGgcugcGGGGg -3'
miRNA:   3'- aGGGCUCC--------UCUGCGCAGcUGGC-----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 78120 0.66 0.884129
Target:  5'- cUCCCGGGGAGAUGUGUgauauauaACCGAa-- -3'
miRNA:   3'- -AGGGCUCCUCUGCGCAgc------UGGCUccc -5'
8945 5' -59.6 NC_002512.2 + 128174 0.66 0.884129
Target:  5'- gCCCG-GG-GACGagGUCG-CCGAGcGGg -3'
miRNA:   3'- aGGGCuCCuCUGCg-CAGCuGGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 147686 0.66 0.884129
Target:  5'- cCCCGGGaGGACGC--CGGCCGAcGGc -3'
miRNA:   3'- aGGGCUCcUCUGCGcaGCUGGCUcCC- -5'
8945 5' -59.6 NC_002512.2 + 13718 0.66 0.884129
Target:  5'- aUCCCGA---GACGCGggaGcCUGAGGGg -3'
miRNA:   3'- -AGGGCUccuCUGCGCag-CuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 95655 0.66 0.884129
Target:  5'- gCCUGAGGAGgaACGcCGUgGgGCUGuAGGGg -3'
miRNA:   3'- aGGGCUCCUC--UGC-GCAgC-UGGC-UCCC- -5'
8945 5' -59.6 NC_002512.2 + 126970 0.66 0.884129
Target:  5'- aCCUGGGGcccGugGcCGUCGACCGcgccAGGc -3'
miRNA:   3'- aGGGCUCCu--CugC-GCAGCUGGC----UCCc -5'
8945 5' -59.6 NC_002512.2 + 86219 0.66 0.884129
Target:  5'- gCCCGgcuucggggaGGGGGACGagGagGACCcGGGGGa -3'
miRNA:   3'- aGGGC----------UCCUCUGCg-CagCUGG-CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 80673 0.66 0.883483
Target:  5'- gUCCCGcggcggcggcgacGGGGGcgaGCGgCGuCCGGGGGg -3'
miRNA:   3'- -AGGGC-------------UCCUCug-CGCaGCuGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 196396 0.66 0.87758
Target:  5'- -gCCGcGGGucuGGCGCGggGACgCGGGGGg -3'
miRNA:   3'- agGGC-UCCu--CUGCGCagCUG-GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 208877 0.66 0.87758
Target:  5'- aCUCGGGGGGACGgGaggGGCCGGGa- -3'
miRNA:   3'- aGGGCUCCUCUGCgCag-CUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 104494 0.66 0.87758
Target:  5'- gCCCGGGGAGGuucaggaaGCGUCcgguGACCGcgaAGGa -3'
miRNA:   3'- aGGGCUCCUCUg-------CGCAG----CUGGC---UCCc -5'
8945 5' -59.6 NC_002512.2 + 122048 0.66 0.87758
Target:  5'- gCCCGGGGcGGCGuCGgCGGCUGugacgacagcGGGGg -3'
miRNA:   3'- aGGGCUCCuCUGC-GCaGCUGGC----------UCCC- -5'
8945 5' -59.6 NC_002512.2 + 97419 0.66 0.873559
Target:  5'- gCCgGGGaGAGACGCG-CGcuccccggacccgccGCCGGGGa -3'
miRNA:   3'- aGGgCUC-CUCUGCGCaGC---------------UGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 8047 0.66 0.870842
Target:  5'- gUCCCGAGGcGcccccGCGgGUCGgacGCCGAGa- -3'
miRNA:   3'- -AGGGCUCCuC-----UGCgCAGC---UGGCUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.