miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 147690 0.66 0.937983
Target:  5'- -gGGAGGaCGccggCCGACGGCGGaCGGg -3'
miRNA:   3'- caCCUCCaGCaca-GGCUGCUGUC-GCU- -5'
8946 3' -56.7 NC_002512.2 + 148083 0.66 0.95083
Target:  5'- ----cGGUCGUccGUcccCCGGCGGCGGCGGc -3'
miRNA:   3'- caccuCCAGCA--CA---GGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 152508 0.75 0.546894
Target:  5'- gGUGGAgcguuccggGGUCGggGUCuCGGCGACGGCGu -3'
miRNA:   3'- -CACCU---------CCAGCa-CAG-GCUGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 152741 0.71 0.750347
Target:  5'- -gGGGcGGUCGgaagGUCCccCGACGGCGAg -3'
miRNA:   3'- caCCU-CCAGCa---CAGGcuGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 152802 0.69 0.828825
Target:  5'- -cGGAGGUCcg---CGGCGACGGCGGg -3'
miRNA:   3'- caCCUCCAGcacagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 153464 0.66 0.949632
Target:  5'- -cGGAGGUugggucugcguuacCGUcguccaGUCCGGgGACGGCGu -3'
miRNA:   3'- caCCUCCA--------------GCA------CAGGCUgCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 154406 0.66 0.942042
Target:  5'- -cGGAGGcgaUCGggGUCCGAggcaagaUGGCGGCGu -3'
miRNA:   3'- caCCUCC---AGCa-CAGGCU-------GCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 156520 0.66 0.954683
Target:  5'- -cGGcGGGgcgCGgggGUCCGGCGGCGG-GAa -3'
miRNA:   3'- caCC-UCCa--GCa--CAGGCUGCUGUCgCU- -5'
8946 3' -56.7 NC_002512.2 + 161263 0.67 0.912186
Target:  5'- -aGGAGGcgCGggcuuUGcCUGACGugGGCGAg -3'
miRNA:   3'- caCCUCCa-GC-----ACaGGCUGCugUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 166807 0.66 0.937983
Target:  5'- cUGGAGGUgGUGgUgGGCGA-AGCGAc -3'
miRNA:   3'- cACCUCCAgCACaGgCUGCUgUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 167499 0.69 0.852279
Target:  5'- --cGAGGcCGUGUCCGAgGGCGccauGCGGc -3'
miRNA:   3'- cacCUCCaGCACAGGCUgCUGU----CGCU- -5'
8946 3' -56.7 NC_002512.2 + 170820 0.66 0.942482
Target:  5'- -cGGGGG-CGgcagCGGCGGCAGCGGc -3'
miRNA:   3'- caCCUCCaGCacagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 171614 0.66 0.946764
Target:  5'- --cGAGGUCGUcgccUUCGGgccCGACAGCGAg -3'
miRNA:   3'- cacCUCCAGCAc---AGGCU---GCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 184126 0.7 0.812353
Target:  5'- -cGGGGG-CGgGUUcgccgaCGACGACAGCGAc -3'
miRNA:   3'- caCCUCCaGCaCAG------GCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 187649 0.66 0.937983
Target:  5'- aUGGAGGgcggCGgccacgGUCaCGgucACGGCGGCGGg -3'
miRNA:   3'- cACCUCCa---GCa-----CAG-GC---UGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 188560 0.7 0.777658
Target:  5'- -cGGAuccGGUCGUGUUCGGgGACAaCGAa -3'
miRNA:   3'- caCCU---CCAGCACAGGCUgCUGUcGCU- -5'
8946 3' -56.7 NC_002512.2 + 191525 0.69 0.836817
Target:  5'- -aGGAGGcCGUgggGUCgGGCGACccGGCGGa -3'
miRNA:   3'- caCCUCCaGCA---CAGgCUGCUG--UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 193233 0.69 0.852279
Target:  5'- cUGGGGGUCaacUG-CCGACGGCGGUu- -3'
miRNA:   3'- cACCUCCAGc--ACaGGCUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 195001 0.68 0.900332
Target:  5'- --aGAGGgcgaCGgcgGUcCCGGCGGCGGCGAc -3'
miRNA:   3'- cacCUCCa---GCa--CA-GGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 196628 0.67 0.928325
Target:  5'- --cGAGGUCGUcGUCUGAa-ACAGUGAu -3'
miRNA:   3'- cacCUCCAGCA-CAGGCUgcUGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.