miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 91982 0.67 0.931806
Target:  5'- -cGGAGGgcCGcGUCCGGgucucccgcgucgcCGGCGGCGGa -3'
miRNA:   3'- caCCUCCa-GCaCAGGCU--------------GCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 92731 0.67 0.917785
Target:  5'- -cGGGGGgcgCGcucgGUCCGAUGGCgccgacgacgGGCGAc -3'
miRNA:   3'- caCCUCCa--GCa---CAGGCUGCUG----------UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 95986 0.67 0.928325
Target:  5'- -cGGcGGUCGgcGUCCGGCG-CcGCGAc -3'
miRNA:   3'- caCCuCCAGCa-CAGGCUGCuGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 96209 0.66 0.95083
Target:  5'- -cGcGAGGUCGgccacggcgGcCgCGGCGGCGGCGGc -3'
miRNA:   3'- caC-CUCCAGCa--------CaG-GCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 101912 0.66 0.949632
Target:  5'- -cGGGGGcggCGUGUucuccaugcggggaCCGACGGagAGCGAa -3'
miRNA:   3'- caCCUCCa--GCACA--------------GGCUGCUg-UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 105117 0.67 0.906367
Target:  5'- -gGGAcugcgcGGUCGUcugggCCGACGACGGCu- -3'
miRNA:   3'- caCCU------CCAGCAca---GGCUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 108828 0.66 0.942482
Target:  5'- cGUGcGAGGUguaCGgagcGUCCGACGACucCGAg -3'
miRNA:   3'- -CAC-CUCCA---GCa---CAGGCUGCUGucGCU- -5'
8946 3' -56.7 NC_002512.2 + 114008 0.69 0.836817
Target:  5'- -cGGuuGUCGUcGUCCGGCGGgcccgccuCGGCGAa -3'
miRNA:   3'- caCCucCAGCA-CAGGCUGCU--------GUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 118076 0.69 0.844637
Target:  5'- -cGGAGGgggCGgcUCCGGCGccgGCGGCGAc -3'
miRNA:   3'- caCCUCCa--GCacAGGCUGC---UGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 118806 0.68 0.887621
Target:  5'- uGUGGGcccccGUCGUGgUCGGCGACcGCGAg -3'
miRNA:   3'- -CACCUc----CAGCACaGGCUGCUGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 119110 0.74 0.585613
Target:  5'- gGUGGGcGUCGUGUaCCGGCGGCGG-GAu -3'
miRNA:   3'- -CACCUcCAGCACA-GGCUGCUGUCgCU- -5'
8946 3' -56.7 NC_002512.2 + 121882 0.67 0.912186
Target:  5'- -gGGAGGUCGcgggGgacgCuCGGCGACGcGCGGg -3'
miRNA:   3'- caCCUCCAGCa---Ca---G-GCUGCUGU-CGCU- -5'
8946 3' -56.7 NC_002512.2 + 123968 0.67 0.93278
Target:  5'- -cGGGGcucuggcGUucCGUGUaCGACGACGGCGAg -3'
miRNA:   3'- caCCUC-------CA--GCACAgGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 126248 0.67 0.923166
Target:  5'- -aGGAGGgccggGUGUCCGAagcCGACcuccAGCGGu -3'
miRNA:   3'- caCCUCCag---CACAGGCU---GCUG----UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 127095 0.66 0.937983
Target:  5'- -cGGAGGgCGg---CGGCGGCGGCGGg -3'
miRNA:   3'- caCCUCCaGCacagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 127834 0.66 0.95083
Target:  5'- -gGGAGGUCGU---CGGCGGCGuccgccGCGAa -3'
miRNA:   3'- caCCUCCAGCAcagGCUGCUGU------CGCU- -5'
8946 3' -56.7 NC_002512.2 + 133719 0.66 0.942482
Target:  5'- -cGGAcGGUCG-GUCgcacCGACAGCGAc -3'
miRNA:   3'- caCCU-CCAGCaCAGgcu-GCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 139006 0.71 0.722172
Target:  5'- gGUGGGGaacaGgggGUCCGACGGCGGCGc -3'
miRNA:   3'- -CACCUCcag-Ca--CAGGCUGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 139811 0.68 0.887621
Target:  5'- -gGGGccucGGUCGggUGUCCaagGACGugGGCGAg -3'
miRNA:   3'- caCCU----CCAGC--ACAGG---CUGCugUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 147628 0.66 0.937983
Target:  5'- -cGGGGG-CGa---CGACGACGGCGGc -3'
miRNA:   3'- caCCUCCaGCacagGCUGCUGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.