miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 221415 0.7 0.812353
Target:  5'- -cGGcGGGUC-UGUCCGACGGCcgccauGCGGa -3'
miRNA:   3'- caCC-UCCAGcACAGGCUGCUGu-----CGCU- -5'
8946 3' -56.7 NC_002512.2 + 184126 0.7 0.812353
Target:  5'- -cGGGGG-CGgGUUcgccgaCGACGACAGCGAc -3'
miRNA:   3'- caCCUCCaGCaCAG------GCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 14782 0.7 0.820668
Target:  5'- cUGGcGGUCGg--CCG-CGGCGGCGAc -3'
miRNA:   3'- cACCuCCAGCacaGGCuGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 209131 0.7 0.820668
Target:  5'- -gGGAcuGcGUCGUGggaGACGACGGCGAg -3'
miRNA:   3'- caCCU--C-CAGCACaggCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 201863 0.69 0.828825
Target:  5'- cUGGGGccugCG-GUCCGAgGACGGCGGc -3'
miRNA:   3'- cACCUCca--GCaCAGGCUgCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 152802 0.69 0.828825
Target:  5'- -cGGAGGUCcg---CGGCGACGGCGGg -3'
miRNA:   3'- caCCUCCAGcacagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 191525 0.69 0.836817
Target:  5'- -aGGAGGcCGUgggGUCgGGCGACccGGCGGa -3'
miRNA:   3'- caCCUCCaGCA---CAGgCUGCUG--UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 114008 0.69 0.836817
Target:  5'- -cGGuuGUCGUcGUCCGGCGGgcccgccuCGGCGAa -3'
miRNA:   3'- caCCucCAGCA-CAGGCUGCU--------GUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 118076 0.69 0.844637
Target:  5'- -cGGAGGgggCGgcUCCGGCGccgGCGGCGAc -3'
miRNA:   3'- caCCUCCa--GCacAGGCUGC---UGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 193233 0.69 0.852279
Target:  5'- cUGGGGGUCaacUG-CCGACGGCGGUu- -3'
miRNA:   3'- cACCUCCAGc--ACaGGCUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 167499 0.69 0.852279
Target:  5'- --cGAGGcCGUGUCCGAgGGCGccauGCGGc -3'
miRNA:   3'- cacCUCCaGCACAGGCUgCUGU----CGCU- -5'
8946 3' -56.7 NC_002512.2 + 17884 0.69 0.852279
Target:  5'- -cGGGGGaCGUGauaGGCGGCGGCGGc -3'
miRNA:   3'- caCCUCCaGCACaggCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 89741 0.69 0.859737
Target:  5'- -cGGAGGUCGUGggagagguUCCcGCGGuCGGCGc -3'
miRNA:   3'- caCCUCCAGCAC--------AGGcUGCU-GUCGCu -5'
8946 3' -56.7 NC_002512.2 + 16502 0.68 0.867005
Target:  5'- -cGGGGGcCG-GaCCGACGAUAGCa- -3'
miRNA:   3'- caCCUCCaGCaCaGGCUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 227616 0.68 0.867005
Target:  5'- -cGGAGGgCG-Gg-CGGCGGCGGCGAg -3'
miRNA:   3'- caCCUCCaGCaCagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 220102 0.68 0.87338
Target:  5'- -aGGAGGUCGaggcGUCCGugagccgccacgcGgGGCGGCGGg -3'
miRNA:   3'- caCCUCCAGCa---CAGGC-------------UgCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 83145 0.68 0.874079
Target:  5'- cGUcGAGGUCGUcggGcCCGGCGGCcGCGGc -3'
miRNA:   3'- -CAcCUCCAGCA---CaGGCUGCUGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 118806 0.68 0.887621
Target:  5'- uGUGGGcccccGUCGUGgUCGGCGACcGCGAg -3'
miRNA:   3'- -CACCUc----CAGCACaGGCUGCUGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 139811 0.68 0.887621
Target:  5'- -gGGGccucGGUCGggUGUCCaagGACGugGGCGAg -3'
miRNA:   3'- caCCU----CCAGC--ACAGG---CUGCugUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 209343 0.68 0.894082
Target:  5'- aUGGAGGU-GUGguacgaggUCGGCGACcuGGCGAc -3'
miRNA:   3'- cACCUCCAgCACa-------GGCUGCUG--UCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.