miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 118806 0.68 0.887621
Target:  5'- uGUGGGcccccGUCGUGgUCGGCGACcGCGAg -3'
miRNA:   3'- -CACCUc----CAGCACaGGCUGCUGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 221973 0.71 0.768664
Target:  5'- -cGGAGGUCGUucGaCCGGCGACAuaCGAu -3'
miRNA:   3'- caCCUCCAGCA--CaGGCUGCUGUc-GCU- -5'
8946 3' -56.7 NC_002512.2 + 152741 0.71 0.750347
Target:  5'- -gGGGcGGUCGgaagGUCCccCGACGGCGAg -3'
miRNA:   3'- caCCU-CCAGCa---CAGGcuGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 139006 0.71 0.722172
Target:  5'- gGUGGGGaacaGgggGUCCGACGGCGGCGc -3'
miRNA:   3'- -CACCUCcag-Ca--CAGGCUGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 83409 0.71 0.722172
Target:  5'- cGUGGGGGUU---UCCGugGugGGUGAg -3'
miRNA:   3'- -CACCUCCAGcacAGGCugCugUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 119110 0.74 0.585613
Target:  5'- gGUGGGcGUCGUGUaCCGGCGGCGG-GAu -3'
miRNA:   3'- -CACCUcCAGCACA-GGCUGCUGUCgCU- -5'
8946 3' -56.7 NC_002512.2 + 152508 0.75 0.546894
Target:  5'- gGUGGAgcguuccggGGUCGggGUCuCGGCGACGGCGu -3'
miRNA:   3'- -CACCU---------CCAGCa-CAG-GCUGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 57038 0.76 0.472302
Target:  5'- -cGGAGGcCGcGUCCGACGACcggggggcgccgGGCGAa -3'
miRNA:   3'- caCCUCCaGCaCAGGCUGCUG------------UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 81908 0.81 0.267014
Target:  5'- -cGGAGGUCGUGcgCCguggagggggacGACGACGGCGAg -3'
miRNA:   3'- caCCUCCAGCACa-GG------------CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 188560 0.7 0.777658
Target:  5'- -cGGAuccGGUCGUGUUCGGgGACAaCGAa -3'
miRNA:   3'- caCCU---CCAGCACAGGCUgCUGUcGCU- -5'
8946 3' -56.7 NC_002512.2 + 218938 0.7 0.795277
Target:  5'- --cGAGGcCGUGUCUGACGACGaUGAa -3'
miRNA:   3'- cacCUCCaGCACAGGCUGCUGUcGCU- -5'
8946 3' -56.7 NC_002512.2 + 30293 0.7 0.803887
Target:  5'- -aGGAGGccccCGcGUCCGACGACccGCGGu -3'
miRNA:   3'- caCCUCCa---GCaCAGGCUGCUGu-CGCU- -5'
8946 3' -56.7 NC_002512.2 + 83145 0.68 0.874079
Target:  5'- cGUcGAGGUCGUcggGcCCGGCGGCcGCGGc -3'
miRNA:   3'- -CAcCUCCAGCA---CaGGCUGCUGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 16502 0.68 0.867005
Target:  5'- -cGGGGGcCG-GaCCGACGAUAGCa- -3'
miRNA:   3'- caCCUCCaGCaCaGGCUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 89741 0.69 0.859737
Target:  5'- -cGGAGGUCGUGggagagguUCCcGCGGuCGGCGc -3'
miRNA:   3'- caCCUCCAGCAC--------AGGcUGCU-GUCGCu -5'
8946 3' -56.7 NC_002512.2 + 17884 0.69 0.852279
Target:  5'- -cGGGGGaCGUGauaGGCGGCGGCGGc -3'
miRNA:   3'- caCCUCCaGCACaggCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 118076 0.69 0.844637
Target:  5'- -cGGAGGgggCGgcUCCGGCGccgGCGGCGAc -3'
miRNA:   3'- caCCUCCa--GCacAGGCUGC---UGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 114008 0.69 0.836817
Target:  5'- -cGGuuGUCGUcGUCCGGCGGgcccgccuCGGCGAa -3'
miRNA:   3'- caCCucCAGCA-CAGGCUGCU--------GUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 152802 0.69 0.828825
Target:  5'- -cGGAGGUCcg---CGGCGACGGCGGg -3'
miRNA:   3'- caCCUCCAGcacagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 14782 0.7 0.820668
Target:  5'- cUGGcGGUCGg--CCG-CGGCGGCGAc -3'
miRNA:   3'- cACCuCCAGCacaGGCuGCUGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.