miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 195001 0.68 0.900332
Target:  5'- --aGAGGgcgaCGgcgGUcCCGGCGGCGGCGAc -3'
miRNA:   3'- cacCUCCa---GCa--CA-GGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 96209 0.66 0.95083
Target:  5'- -cGcGAGGUCGgccacggcgGcCgCGGCGGCGGCGGc -3'
miRNA:   3'- caC-CUCCAGCa--------CaG-GCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 226723 0.71 0.722172
Target:  5'- -gGGAGGcCGcGggCGACGACGGCGGg -3'
miRNA:   3'- caCCUCCaGCaCagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 201863 0.69 0.828825
Target:  5'- cUGGGGccugCG-GUCCGAgGACGGCGGc -3'
miRNA:   3'- cACCUCca--GCaCAGGCUgCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 92731 0.67 0.917785
Target:  5'- -cGGGGGgcgCGcucgGUCCGAUGGCgccgacgacgGGCGAc -3'
miRNA:   3'- caCCUCCa--GCa---CAGGCUGCUG----------UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 127834 0.66 0.95083
Target:  5'- -gGGAGGUCGU---CGGCGGCGuccgccGCGAa -3'
miRNA:   3'- caCCUCCAGCAcagGCUGCUGU------CGCU- -5'
8946 3' -56.7 NC_002512.2 + 191525 0.69 0.836817
Target:  5'- -aGGAGGcCGUgggGUCgGGCGACccGGCGGa -3'
miRNA:   3'- caCCUCCaGCA---CAGgCUGCUG--UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 148083 0.66 0.95083
Target:  5'- ----cGGUCGUccGUcccCCGGCGGCGGCGGc -3'
miRNA:   3'- caccuCCAGCA--CA---GGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 156520 0.66 0.954683
Target:  5'- -cGGcGGGgcgCGgggGUCCGGCGGCGG-GAa -3'
miRNA:   3'- caCC-UCCa--GCa--CAGGCUGCUGUCgCU- -5'
8946 3' -56.7 NC_002512.2 + 187649 0.66 0.937983
Target:  5'- aUGGAGGgcggCGgccacgGUCaCGgucACGGCGGCGGg -3'
miRNA:   3'- cACCUCCa---GCa-----CAG-GC---UGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 161263 0.67 0.912186
Target:  5'- -aGGAGGcgCGggcuuUGcCUGACGugGGCGAg -3'
miRNA:   3'- caCCUCCa-GC-----ACaGGCUGCugUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 227616 0.68 0.867005
Target:  5'- -cGGAGGgCG-Gg-CGGCGGCGGCGAg -3'
miRNA:   3'- caCCUCCaGCaCagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 36225 0.67 0.933264
Target:  5'- -cGGAGa-CG-GUCCcgagGACGACGGCGAg -3'
miRNA:   3'- caCCUCcaGCaCAGG----CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 166807 0.66 0.937983
Target:  5'- cUGGAGGUgGUGgUgGGCGA-AGCGAc -3'
miRNA:   3'- cACCUCCAgCACaGgCUGCUgUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 108828 0.66 0.942482
Target:  5'- cGUGcGAGGUguaCGgagcGUCCGACGACucCGAg -3'
miRNA:   3'- -CAC-CUCCA---GCa---CAGGCUGCUGucGCU- -5'
8946 3' -56.7 NC_002512.2 + 101912 0.66 0.949632
Target:  5'- -cGGGGGcggCGUGUucuccaugcggggaCCGACGGagAGCGAa -3'
miRNA:   3'- caCCUCCa--GCACA--------------GGCUGCUg-UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 228613 0.73 0.653327
Target:  5'- gGUGGAggaguccGGUCGUcGUCCGucgacgaGACGGCGAg -3'
miRNA:   3'- -CACCU-------CCAGCA-CAGGCug-----CUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 204866 0.71 0.722172
Target:  5'- cGUGGAGGUcCGcGaCCGACGGCgagcucucggacGGCGAg -3'
miRNA:   3'- -CACCUCCA-GCaCaGGCUGCUG------------UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 215597 0.7 0.795277
Target:  5'- -gGGAGGacagCGUcGUCCGggucuGCGGCAGCGu -3'
miRNA:   3'- caCCUCCa---GCA-CAGGC-----UGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 209131 0.7 0.820668
Target:  5'- -gGGAcuGcGUCGUGggaGACGACGGCGAg -3'
miRNA:   3'- caCCU--C-CAGCACaggCUGCUGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.