Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 3' | -56.7 | NC_002512.2 | + | 121882 | 0.67 | 0.912186 |
Target: 5'- -gGGAGGUCGcgggGgacgCuCGGCGACGcGCGGg -3' miRNA: 3'- caCCUCCAGCa---Ca---G-GCUGCUGU-CGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 34056 | 0.67 | 0.917785 |
Target: 5'- --cGAGG-CGUGcCCcACGACGGCGGc -3' miRNA: 3'- cacCUCCaGCACaGGcUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 123968 | 0.67 | 0.93278 |
Target: 5'- -cGGGGcucuggcGUucCGUGUaCGACGACGGCGAg -3' miRNA: 3'- caCCUC-------CA--GCACAgGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 152741 | 0.71 | 0.750347 |
Target: 5'- -gGGGcGGUCGgaagGUCCccCGACGGCGAg -3' miRNA: 3'- caCCU-CCAGCa---CAGGcuGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 139006 | 0.71 | 0.722172 |
Target: 5'- gGUGGGGaacaGgggGUCCGACGGCGGCGc -3' miRNA: 3'- -CACCUCcag-Ca--CAGGCUGCUGUCGCu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 126248 | 0.67 | 0.923166 |
Target: 5'- -aGGAGGgccggGUGUCCGAagcCGACcuccAGCGGu -3' miRNA: 3'- caCCUCCag---CACAGGCU---GCUG----UCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 95986 | 0.67 | 0.928325 |
Target: 5'- -cGGcGGUCGgcGUCCGGCG-CcGCGAc -3' miRNA: 3'- caCCuCCAGCa-CAGGCUGCuGuCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 152508 | 0.75 | 0.546894 |
Target: 5'- gGUGGAgcguuccggGGUCGggGUCuCGGCGACGGCGu -3' miRNA: 3'- -CACCU---------CCAGCa-CAG-GCUGCUGUCGCu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 91982 | 0.67 | 0.931806 |
Target: 5'- -cGGAGGgcCGcGUCCGGgucucccgcgucgcCGGCGGCGGa -3' miRNA: 3'- caCCUCCa-GCaCAGGCU--------------GCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 81030 | 0.66 | 0.954683 |
Target: 5'- -cGGAGG-CGgcagCCGGCGuuccgGCAGCGGu -3' miRNA: 3'- caCCUCCaGCaca-GGCUGC-----UGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 30293 | 0.7 | 0.803887 |
Target: 5'- -aGGAGGccccCGcGUCCGACGACccGCGGu -3' miRNA: 3'- caCCUCCa---GCaCAGGCUGCUGu-CGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 118806 | 0.68 | 0.887621 |
Target: 5'- uGUGGGcccccGUCGUGgUCGGCGACcGCGAg -3' miRNA: 3'- -CACCUc----CAGCACaGGCUGCUGuCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 139811 | 0.68 | 0.887621 |
Target: 5'- -gGGGccucGGUCGggUGUCCaagGACGugGGCGAg -3' miRNA: 3'- caCCU----CCAGC--ACAGG---CUGCugUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 105117 | 0.67 | 0.906367 |
Target: 5'- -gGGAcugcgcGGUCGUcugggCCGACGACGGCu- -3' miRNA: 3'- caCCU------CCAGCAca---GGCUGCUGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 32081 | 0.68 | 0.900332 |
Target: 5'- -gGGGGGUCG---CCGAUGGCGGCc- -3' miRNA: 3'- caCCUCCAGCacaGGCUGCUGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 84628 | 0.68 | 0.900332 |
Target: 5'- -aGcAGGUCGUcGUCCaGGCGGCGGCc- -3' miRNA: 3'- caCcUCCAGCA-CAGG-CUGCUGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 118076 | 0.69 | 0.844637 |
Target: 5'- -cGGAGGgggCGgcUCCGGCGccgGCGGCGAc -3' miRNA: 3'- caCCUCCa--GCacAGGCUGC---UGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 114008 | 0.69 | 0.836817 |
Target: 5'- -cGGuuGUCGUcGUCCGGCGGgcccgccuCGGCGAa -3' miRNA: 3'- caCCucCAGCA-CAGGCUGCU--------GUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 152802 | 0.69 | 0.828825 |
Target: 5'- -cGGAGGUCcg---CGGCGACGGCGGg -3' miRNA: 3'- caCCUCCAGcacagGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 14782 | 0.7 | 0.820668 |
Target: 5'- cUGGcGGUCGg--CCG-CGGCGGCGAc -3' miRNA: 3'- cACCuCCAGCacaGGCuGCUGUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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