miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 187649 0.66 0.937983
Target:  5'- aUGGAGGgcggCGgccacgGUCaCGgucACGGCGGCGGg -3'
miRNA:   3'- cACCUCCa---GCa-----CAG-GC---UGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 147628 0.66 0.937983
Target:  5'- -cGGGGG-CGa---CGACGACGGCGGc -3'
miRNA:   3'- caCCUCCaGCacagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 74401 0.67 0.933264
Target:  5'- aUGGGGGUCcggacgGUG-CCGACGAacucGCGGu -3'
miRNA:   3'- cACCUCCAG------CACaGGCUGCUgu--CGCU- -5'
8946 3' -56.7 NC_002512.2 + 4525 0.67 0.933264
Target:  5'- gGUGGAGGagGagaagCGGCGACGGUGAg -3'
miRNA:   3'- -CACCUCCagCacag-GCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 36225 0.67 0.933264
Target:  5'- -cGGAGa-CG-GUCCcgagGACGACGGCGAg -3'
miRNA:   3'- caCCUCcaGCaCAGG----CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 123968 0.67 0.93278
Target:  5'- -cGGGGcucuggcGUucCGUGUaCGACGACGGCGAg -3'
miRNA:   3'- caCCUC-------CA--GCACAgGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 91982 0.67 0.931806
Target:  5'- -cGGAGGgcCGcGUCCGGgucucccgcgucgcCGGCGGCGGa -3'
miRNA:   3'- caCCUCCa-GCaCAGGCU--------------GCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 95986 0.67 0.928325
Target:  5'- -cGGcGGUCGgcGUCCGGCG-CcGCGAc -3'
miRNA:   3'- caCCuCCAGCa-CAGGCUGCuGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 212428 0.67 0.928325
Target:  5'- -gGGAGGUCGaGUUCGGgccggcCGGCcGCGAc -3'
miRNA:   3'- caCCUCCAGCaCAGGCU------GCUGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 196628 0.67 0.928325
Target:  5'- --cGAGGUCGUcGUCUGAa-ACAGUGAu -3'
miRNA:   3'- cacCUCCAGCA-CAGGCUgcUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 126248 0.67 0.923166
Target:  5'- -aGGAGGgccggGUGUCCGAagcCGACcuccAGCGGu -3'
miRNA:   3'- caCCUCCag---CACAGGCU---GCUG----UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 217603 0.67 0.917785
Target:  5'- -cGGGGGUCGU---CGGCGACucgGGCGGc -3'
miRNA:   3'- caCCUCCAGCAcagGCUGCUG---UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 92731 0.67 0.917785
Target:  5'- -cGGGGGgcgCGcucgGUCCGAUGGCgccgacgacgGGCGAc -3'
miRNA:   3'- caCCUCCa--GCa---CAGGCUGCUG----------UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 34056 0.67 0.917785
Target:  5'- --cGAGG-CGUGcCCcACGACGGCGGc -3'
miRNA:   3'- cacCUCCaGCACaGGcUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 161263 0.67 0.912186
Target:  5'- -aGGAGGcgCGggcuuUGcCUGACGugGGCGAg -3'
miRNA:   3'- caCCUCCa-GC-----ACaGGCUGCugUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 121882 0.67 0.912186
Target:  5'- -gGGAGGUCGcgggGgacgCuCGGCGACGcGCGGg -3'
miRNA:   3'- caCCUCCAGCa---Ca---G-GCUGCUGU-CGCU- -5'
8946 3' -56.7 NC_002512.2 + 105117 0.67 0.906367
Target:  5'- -gGGAcugcgcGGUCGUcugggCCGACGACGGCu- -3'
miRNA:   3'- caCCU------CCAGCAca---GGCUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 195001 0.68 0.900332
Target:  5'- --aGAGGgcgaCGgcgGUcCCGGCGGCGGCGAc -3'
miRNA:   3'- cacCUCCa---GCa--CA-GGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 84628 0.68 0.900332
Target:  5'- -aGcAGGUCGUcGUCCaGGCGGCGGCc- -3'
miRNA:   3'- caCcUCCAGCA-CAGG-CUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 32081 0.68 0.900332
Target:  5'- -gGGGGGUCG---CCGAUGGCGGCc- -3'
miRNA:   3'- caCCUCCAGCacaGGCUGCUGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.