miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 223750 1.09 0.004306
Target:  5'- cGUGGAGGUCGUGUCCGACGACAGCGAg -3'
miRNA:   3'- -CACCUCCAGCACAGGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 81908 0.81 0.267014
Target:  5'- -cGGAGGUCGUGcgCCguggagggggacGACGACGGCGAg -3'
miRNA:   3'- caCCUCCAGCACa-GG------------CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 57038 0.76 0.472302
Target:  5'- -cGGAGGcCGcGUCCGACGACcggggggcgccgGGCGAa -3'
miRNA:   3'- caCCUCCaGCaCAGGCUGCUG------------UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 152508 0.75 0.546894
Target:  5'- gGUGGAgcguuccggGGUCGggGUCuCGGCGACGGCGu -3'
miRNA:   3'- -CACCU---------CCAGCa-CAG-GCUGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 119110 0.74 0.585613
Target:  5'- gGUGGGcGUCGUGUaCCGGCGGCGG-GAu -3'
miRNA:   3'- -CACCUcCAGCACA-GGCUGCUGUCgCU- -5'
8946 3' -56.7 NC_002512.2 + 228613 0.73 0.653327
Target:  5'- gGUGGAggaguccGGUCGUcGUCCGucgacgaGACGGCGAg -3'
miRNA:   3'- -CACCU-------CCAGCA-CAGGCug-----CUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 221598 0.72 0.693356
Target:  5'- -cGGAGGggg-GUCgGugGACGGCGAg -3'
miRNA:   3'- caCCUCCagcaCAGgCugCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 226384 0.72 0.703019
Target:  5'- gGUGGAGGg-----CCGACGACGGCGc -3'
miRNA:   3'- -CACCUCCagcacaGGCUGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 226723 0.71 0.722172
Target:  5'- -gGGAGGcCGcGggCGACGACGGCGGg -3'
miRNA:   3'- caCCUCCaGCaCagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 204866 0.71 0.722172
Target:  5'- cGUGGAGGUcCGcGaCCGACGGCgagcucucggacGGCGAg -3'
miRNA:   3'- -CACCUCCA-GCaCaGGCUGCUG------------UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 139006 0.71 0.722172
Target:  5'- gGUGGGGaacaGgggGUCCGACGGCGGCGc -3'
miRNA:   3'- -CACCUCcag-Ca--CAGGCUGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 83409 0.71 0.722172
Target:  5'- cGUGGGGGUU---UCCGugGugGGUGAg -3'
miRNA:   3'- -CACCUCCAGcacAGGCugCugUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 152741 0.71 0.750347
Target:  5'- -gGGGcGGUCGgaagGUCCccCGACGGCGAg -3'
miRNA:   3'- caCCU-CCAGCa---CAGGcuGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 219830 0.71 0.759557
Target:  5'- -aGGGGGUCGgucgggggGUCCGGCccGGgGGCGGa -3'
miRNA:   3'- caCCUCCAGCa-------CAGGCUG--CUgUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 221973 0.71 0.768664
Target:  5'- -cGGAGGUCGUucGaCCGGCGACAuaCGAu -3'
miRNA:   3'- caCCUCCAGCA--CaGGCUGCUGUc-GCU- -5'
8946 3' -56.7 NC_002512.2 + 188560 0.7 0.777658
Target:  5'- -cGGAuccGGUCGUGUUCGGgGACAaCGAa -3'
miRNA:   3'- caCCU---CCAGCACAGGCUgCUGUcGCU- -5'
8946 3' -56.7 NC_002512.2 + 218938 0.7 0.795277
Target:  5'- --cGAGGcCGUGUCUGACGACGaUGAa -3'
miRNA:   3'- cacCUCCaGCACAGGCUGCUGUcGCU- -5'
8946 3' -56.7 NC_002512.2 + 227517 0.7 0.795277
Target:  5'- -cGGGGGggaGaGUCCGGCGGCGGaCGGg -3'
miRNA:   3'- caCCUCCag-CaCAGGCUGCUGUC-GCU- -5'
8946 3' -56.7 NC_002512.2 + 215597 0.7 0.795277
Target:  5'- -gGGAGGacagCGUcGUCCGggucuGCGGCAGCGu -3'
miRNA:   3'- caCCUCCa---GCA-CAGGC-----UGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 30293 0.7 0.803887
Target:  5'- -aGGAGGccccCGcGUCCGACGACccGCGGu -3'
miRNA:   3'- caCCUCCa---GCaCAGGCUGCUGu-CGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.