Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8946 | 3' | -56.7 | NC_002512.2 | + | 10708 | 0.66 | 0.954683 |
Target: 5'- -aGGAagcGGUag---CCGACGGCGGCGAa -3' miRNA: 3'- caCCU---CCAgcacaGGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 83801 | 0.66 | 0.95083 |
Target: 5'- -aGGAccGcGUCGggcgcgCCGGCGGCGGCGGc -3' miRNA: 3'- caCCU--C-CAGCaca---GGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 86128 | 0.66 | 0.95083 |
Target: 5'- -aGGAGGUCGcggaccUGgaagCCGACGccGCGGCc- -3' miRNA: 3'- caCCUCCAGC------ACa---GGCUGC--UGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 80662 | 0.66 | 0.95083 |
Target: 5'- -cGGGuccGUCG-GUCCcgcGGCGGCGGCGAc -3' miRNA: 3'- caCCUc--CAGCaCAGG---CUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 133719 | 0.66 | 0.942482 |
Target: 5'- -cGGAcGGUCG-GUCgcacCGACAGCGAc -3' miRNA: 3'- caCCU-CCAGCaCAGgcu-GCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 153464 | 0.66 | 0.949632 |
Target: 5'- -cGGAGGUugggucugcguuacCGUcguccaGUCCGGgGACGGCGu -3' miRNA: 3'- caCCUCCA--------------GCA------CAGGCUgCUGUCGCu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 81030 | 0.66 | 0.954683 |
Target: 5'- -cGGAGG-CGgcagCCGGCGuuccgGCAGCGGu -3' miRNA: 3'- caCCUCCaGCaca-GGCUGC-----UGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 204820 | 0.66 | 0.954683 |
Target: 5'- -cGGGGGcgCGgcggcuccGUCCgggagGACGACGGCGGu -3' miRNA: 3'- caCCUCCa-GCa-------CAGG-----CUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 156520 | 0.66 | 0.954683 |
Target: 5'- -cGGcGGGgcgCGgggGUCCGGCGGCGG-GAa -3' miRNA: 3'- caCC-UCCa--GCa--CAGGCUGCUGUCgCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 101912 | 0.66 | 0.949632 |
Target: 5'- -cGGGGGcggCGUGUucuccaugcggggaCCGACGGagAGCGAa -3' miRNA: 3'- caCCUCCa--GCACA--------------GGCUGCUg-UCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 187649 | 0.66 | 0.937983 |
Target: 5'- aUGGAGGgcggCGgccacgGUCaCGgucACGGCGGCGGg -3' miRNA: 3'- cACCUCCa---GCa-----CAG-GC---UGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 96209 | 0.66 | 0.95083 |
Target: 5'- -cGcGAGGUCGgccacggcgGcCgCGGCGGCGGCGGc -3' miRNA: 3'- caC-CUCCAGCa--------CaG-GCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 127834 | 0.66 | 0.95083 |
Target: 5'- -gGGAGGUCGU---CGGCGGCGuccgccGCGAa -3' miRNA: 3'- caCCUCCAGCAcagGCUGCUGU------CGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 170820 | 0.66 | 0.942482 |
Target: 5'- -cGGGGG-CGgcagCGGCGGCAGCGGc -3' miRNA: 3'- caCCUCCaGCacagGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 108828 | 0.66 | 0.942482 |
Target: 5'- cGUGcGAGGUguaCGgagcGUCCGACGACucCGAg -3' miRNA: 3'- -CAC-CUCCA---GCa---CAGGCUGCUGucGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 148083 | 0.66 | 0.95083 |
Target: 5'- ----cGGUCGUccGUcccCCGGCGGCGGCGGc -3' miRNA: 3'- caccuCCAGCA--CA---GGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 166807 | 0.66 | 0.937983 |
Target: 5'- cUGGAGGUgGUGgUgGGCGA-AGCGAc -3' miRNA: 3'- cACCUCCAgCACaGgCUGCUgUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 147628 | 0.66 | 0.937983 |
Target: 5'- -cGGGGG-CGa---CGACGACGGCGGc -3' miRNA: 3'- caCCUCCaGCacagGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 171614 | 0.66 | 0.946764 |
Target: 5'- --cGAGGUCGUcgccUUCGGgccCGACAGCGAg -3' miRNA: 3'- cacCUCCAGCAc---AGGCU---GCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 154406 | 0.66 | 0.942042 |
Target: 5'- -cGGAGGcgaUCGggGUCCGAggcaagaUGGCGGCGu -3' miRNA: 3'- caCCUCC---AGCa-CAGGCU-------GCUGUCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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