miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 10708 0.66 0.954683
Target:  5'- -aGGAagcGGUag---CCGACGGCGGCGAa -3'
miRNA:   3'- caCCU---CCAgcacaGGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 83801 0.66 0.95083
Target:  5'- -aGGAccGcGUCGggcgcgCCGGCGGCGGCGGc -3'
miRNA:   3'- caCCU--C-CAGCaca---GGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 86128 0.66 0.95083
Target:  5'- -aGGAGGUCGcggaccUGgaagCCGACGccGCGGCc- -3'
miRNA:   3'- caCCUCCAGC------ACa---GGCUGC--UGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 80662 0.66 0.95083
Target:  5'- -cGGGuccGUCG-GUCCcgcGGCGGCGGCGAc -3'
miRNA:   3'- caCCUc--CAGCaCAGG---CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 133719 0.66 0.942482
Target:  5'- -cGGAcGGUCG-GUCgcacCGACAGCGAc -3'
miRNA:   3'- caCCU-CCAGCaCAGgcu-GCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 153464 0.66 0.949632
Target:  5'- -cGGAGGUugggucugcguuacCGUcguccaGUCCGGgGACGGCGu -3'
miRNA:   3'- caCCUCCA--------------GCA------CAGGCUgCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 81030 0.66 0.954683
Target:  5'- -cGGAGG-CGgcagCCGGCGuuccgGCAGCGGu -3'
miRNA:   3'- caCCUCCaGCaca-GGCUGC-----UGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 204820 0.66 0.954683
Target:  5'- -cGGGGGcgCGgcggcuccGUCCgggagGACGACGGCGGu -3'
miRNA:   3'- caCCUCCa-GCa-------CAGG-----CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 156520 0.66 0.954683
Target:  5'- -cGGcGGGgcgCGgggGUCCGGCGGCGG-GAa -3'
miRNA:   3'- caCC-UCCa--GCa--CAGGCUGCUGUCgCU- -5'
8946 3' -56.7 NC_002512.2 + 101912 0.66 0.949632
Target:  5'- -cGGGGGcggCGUGUucuccaugcggggaCCGACGGagAGCGAa -3'
miRNA:   3'- caCCUCCa--GCACA--------------GGCUGCUg-UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 187649 0.66 0.937983
Target:  5'- aUGGAGGgcggCGgccacgGUCaCGgucACGGCGGCGGg -3'
miRNA:   3'- cACCUCCa---GCa-----CAG-GC---UGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 96209 0.66 0.95083
Target:  5'- -cGcGAGGUCGgccacggcgGcCgCGGCGGCGGCGGc -3'
miRNA:   3'- caC-CUCCAGCa--------CaG-GCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 127834 0.66 0.95083
Target:  5'- -gGGAGGUCGU---CGGCGGCGuccgccGCGAa -3'
miRNA:   3'- caCCUCCAGCAcagGCUGCUGU------CGCU- -5'
8946 3' -56.7 NC_002512.2 + 170820 0.66 0.942482
Target:  5'- -cGGGGG-CGgcagCGGCGGCAGCGGc -3'
miRNA:   3'- caCCUCCaGCacagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 108828 0.66 0.942482
Target:  5'- cGUGcGAGGUguaCGgagcGUCCGACGACucCGAg -3'
miRNA:   3'- -CAC-CUCCA---GCa---CAGGCUGCUGucGCU- -5'
8946 3' -56.7 NC_002512.2 + 148083 0.66 0.95083
Target:  5'- ----cGGUCGUccGUcccCCGGCGGCGGCGGc -3'
miRNA:   3'- caccuCCAGCA--CA---GGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 166807 0.66 0.937983
Target:  5'- cUGGAGGUgGUGgUgGGCGA-AGCGAc -3'
miRNA:   3'- cACCUCCAgCACaGgCUGCUgUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 147628 0.66 0.937983
Target:  5'- -cGGGGG-CGa---CGACGACGGCGGc -3'
miRNA:   3'- caCCUCCaGCacagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 171614 0.66 0.946764
Target:  5'- --cGAGGUCGUcgccUUCGGgccCGACAGCGAg -3'
miRNA:   3'- cacCUCCAGCAc---AGGCU---GCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 154406 0.66 0.942042
Target:  5'- -cGGAGGcgaUCGggGUCCGAggcaagaUGGCGGCGu -3'
miRNA:   3'- caCCUCC---AGCa-CAGGCU-------GCUGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.