miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 4525 0.67 0.933264
Target:  5'- gGUGGAGGagGagaagCGGCGACGGUGAg -3'
miRNA:   3'- -CACCUCCagCacag-GCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 10708 0.66 0.954683
Target:  5'- -aGGAagcGGUag---CCGACGGCGGCGAa -3'
miRNA:   3'- caCCU---CCAgcacaGGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 14782 0.7 0.820668
Target:  5'- cUGGcGGUCGg--CCG-CGGCGGCGAc -3'
miRNA:   3'- cACCuCCAGCacaGGCuGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 16502 0.68 0.867005
Target:  5'- -cGGGGGcCG-GaCCGACGAUAGCa- -3'
miRNA:   3'- caCCUCCaGCaCaGGCUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 17884 0.69 0.852279
Target:  5'- -cGGGGGaCGUGauaGGCGGCGGCGGc -3'
miRNA:   3'- caCCUCCaGCACaggCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 30293 0.7 0.803887
Target:  5'- -aGGAGGccccCGcGUCCGACGACccGCGGu -3'
miRNA:   3'- caCCUCCa---GCaCAGGCUGCUGu-CGCU- -5'
8946 3' -56.7 NC_002512.2 + 32081 0.68 0.900332
Target:  5'- -gGGGGGUCG---CCGAUGGCGGCc- -3'
miRNA:   3'- caCCUCCAGCacaGGCUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 34056 0.67 0.917785
Target:  5'- --cGAGG-CGUGcCCcACGACGGCGGc -3'
miRNA:   3'- cacCUCCaGCACaGGcUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 36225 0.67 0.933264
Target:  5'- -cGGAGa-CG-GUCCcgagGACGACGGCGAg -3'
miRNA:   3'- caCCUCcaGCaCAGG----CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 57038 0.76 0.472302
Target:  5'- -cGGAGGcCGcGUCCGACGACcggggggcgccgGGCGAa -3'
miRNA:   3'- caCCUCCaGCaCAGGCUGCUG------------UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 74401 0.67 0.933264
Target:  5'- aUGGGGGUCcggacgGUG-CCGACGAacucGCGGu -3'
miRNA:   3'- cACCUCCAG------CACaGGCUGCUgu--CGCU- -5'
8946 3' -56.7 NC_002512.2 + 80662 0.66 0.95083
Target:  5'- -cGGGuccGUCG-GUCCcgcGGCGGCGGCGAc -3'
miRNA:   3'- caCCUc--CAGCaCAGG---CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 81030 0.66 0.954683
Target:  5'- -cGGAGG-CGgcagCCGGCGuuccgGCAGCGGu -3'
miRNA:   3'- caCCUCCaGCaca-GGCUGC-----UGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 81908 0.81 0.267014
Target:  5'- -cGGAGGUCGUGcgCCguggagggggacGACGACGGCGAg -3'
miRNA:   3'- caCCUCCAGCACa-GG------------CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 83145 0.68 0.874079
Target:  5'- cGUcGAGGUCGUcggGcCCGGCGGCcGCGGc -3'
miRNA:   3'- -CAcCUCCAGCA---CaGGCUGCUGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 83409 0.71 0.722172
Target:  5'- cGUGGGGGUU---UCCGugGugGGUGAg -3'
miRNA:   3'- -CACCUCCAGcacAGGCugCugUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 83801 0.66 0.95083
Target:  5'- -aGGAccGcGUCGggcgcgCCGGCGGCGGCGGc -3'
miRNA:   3'- caCCU--C-CAGCaca---GGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 84628 0.68 0.900332
Target:  5'- -aGcAGGUCGUcGUCCaGGCGGCGGCc- -3'
miRNA:   3'- caCcUCCAGCA-CAGG-CUGCUGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 86128 0.66 0.95083
Target:  5'- -aGGAGGUCGcggaccUGgaagCCGACGccGCGGCc- -3'
miRNA:   3'- caCCUCCAGC------ACa---GGCUGC--UGUCGcu -5'
8946 3' -56.7 NC_002512.2 + 89741 0.69 0.859737
Target:  5'- -cGGAGGUCGUGggagagguUCCcGCGGuCGGCGc -3'
miRNA:   3'- caCCUCCAGCAC--------AGGcUGCU-GUCGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.