Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 3' | -56.7 | NC_002512.2 | + | 4525 | 0.67 | 0.933264 |
Target: 5'- gGUGGAGGagGagaagCGGCGACGGUGAg -3' miRNA: 3'- -CACCUCCagCacag-GCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 10708 | 0.66 | 0.954683 |
Target: 5'- -aGGAagcGGUag---CCGACGGCGGCGAa -3' miRNA: 3'- caCCU---CCAgcacaGGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 14782 | 0.7 | 0.820668 |
Target: 5'- cUGGcGGUCGg--CCG-CGGCGGCGAc -3' miRNA: 3'- cACCuCCAGCacaGGCuGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 16502 | 0.68 | 0.867005 |
Target: 5'- -cGGGGGcCG-GaCCGACGAUAGCa- -3' miRNA: 3'- caCCUCCaGCaCaGGCUGCUGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 17884 | 0.69 | 0.852279 |
Target: 5'- -cGGGGGaCGUGauaGGCGGCGGCGGc -3' miRNA: 3'- caCCUCCaGCACaggCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 30293 | 0.7 | 0.803887 |
Target: 5'- -aGGAGGccccCGcGUCCGACGACccGCGGu -3' miRNA: 3'- caCCUCCa---GCaCAGGCUGCUGu-CGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 32081 | 0.68 | 0.900332 |
Target: 5'- -gGGGGGUCG---CCGAUGGCGGCc- -3' miRNA: 3'- caCCUCCAGCacaGGCUGCUGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 34056 | 0.67 | 0.917785 |
Target: 5'- --cGAGG-CGUGcCCcACGACGGCGGc -3' miRNA: 3'- cacCUCCaGCACaGGcUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 36225 | 0.67 | 0.933264 |
Target: 5'- -cGGAGa-CG-GUCCcgagGACGACGGCGAg -3' miRNA: 3'- caCCUCcaGCaCAGG----CUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 57038 | 0.76 | 0.472302 |
Target: 5'- -cGGAGGcCGcGUCCGACGACcggggggcgccgGGCGAa -3' miRNA: 3'- caCCUCCaGCaCAGGCUGCUG------------UCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 74401 | 0.67 | 0.933264 |
Target: 5'- aUGGGGGUCcggacgGUG-CCGACGAacucGCGGu -3' miRNA: 3'- cACCUCCAG------CACaGGCUGCUgu--CGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 80662 | 0.66 | 0.95083 |
Target: 5'- -cGGGuccGUCG-GUCCcgcGGCGGCGGCGAc -3' miRNA: 3'- caCCUc--CAGCaCAGG---CUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 81030 | 0.66 | 0.954683 |
Target: 5'- -cGGAGG-CGgcagCCGGCGuuccgGCAGCGGu -3' miRNA: 3'- caCCUCCaGCaca-GGCUGC-----UGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 81908 | 0.81 | 0.267014 |
Target: 5'- -cGGAGGUCGUGcgCCguggagggggacGACGACGGCGAg -3' miRNA: 3'- caCCUCCAGCACa-GG------------CUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 83145 | 0.68 | 0.874079 |
Target: 5'- cGUcGAGGUCGUcggGcCCGGCGGCcGCGGc -3' miRNA: 3'- -CAcCUCCAGCA---CaGGCUGCUGuCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 83409 | 0.71 | 0.722172 |
Target: 5'- cGUGGGGGUU---UCCGugGugGGUGAg -3' miRNA: 3'- -CACCUCCAGcacAGGCugCugUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 83801 | 0.66 | 0.95083 |
Target: 5'- -aGGAccGcGUCGggcgcgCCGGCGGCGGCGGc -3' miRNA: 3'- caCCU--C-CAGCaca---GGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 84628 | 0.68 | 0.900332 |
Target: 5'- -aGcAGGUCGUcGUCCaGGCGGCGGCc- -3' miRNA: 3'- caCcUCCAGCA-CAGG-CUGCUGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 86128 | 0.66 | 0.95083 |
Target: 5'- -aGGAGGUCGcggaccUGgaagCCGACGccGCGGCc- -3' miRNA: 3'- caCCUCCAGC------ACa---GGCUGC--UGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 89741 | 0.69 | 0.859737 |
Target: 5'- -cGGAGGUCGUGggagagguUCCcGCGGuCGGCGc -3' miRNA: 3'- caCCUCCAGCAC--------AGGcUGCU-GUCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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