Results 61 - 80 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 5' | -62.1 | NC_002512.2 | + | 52290 | 0.66 | 0.814021 |
Target: 5'- cGCCGaGAuCGauUCGCCGGaGACGcUGGCg -3' miRNA: 3'- cUGGC-CU-GC--AGCGGCCcCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 82205 | 0.66 | 0.805971 |
Target: 5'- gGGCCGG-CGUCcucCCGGGG-CGggaagCGGg -3' miRNA: 3'- -CUGGCCuGCAGc--GGCCCCuGCa----GCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 108164 | 0.66 | 0.814021 |
Target: 5'- -uCCGG-CGUCGCCGGcGccuucugcGGCGUUcagGGCg -3' miRNA: 3'- cuGGCCuGCAGCGGCC-C--------CUGCAG---CCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 99732 | 0.66 | 0.772512 |
Target: 5'- gGGCCGGccCGcCGCCGGGcccCG-CGGCc -3' miRNA: 3'- -CUGGCCu-GCaGCGGCCCcu-GCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 124268 | 0.66 | 0.797788 |
Target: 5'- cACCcGACGgcggCGUCGGacccGGGCGUgCGGCu -3' miRNA: 3'- cUGGcCUGCa---GCGGCC----CCUGCA-GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 113154 | 0.66 | 0.797788 |
Target: 5'- cGCCGG-CcUCGCCGcggccgggcGGGACGcgacCGGCg -3' miRNA: 3'- cUGGCCuGcAGCGGC---------CCCUGCa---GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 193870 | 0.66 | 0.797788 |
Target: 5'- cAUCGGACG-CGgCGGuGGACGacgCGGg -3' miRNA: 3'- cUGGCCUGCaGCgGCC-CCUGCa--GCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 201848 | 0.66 | 0.81162 |
Target: 5'- cGGCCGGcaGC-UCGCCuGGGGccugcgguccgaggACGgCGGCg -3' miRNA: 3'- -CUGGCC--UGcAGCGG-CCCC--------------UGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 117004 | 0.66 | 0.78948 |
Target: 5'- cGACC-GACGagaaCGCCGGgccggaGGACG-CGGCc -3' miRNA: 3'- -CUGGcCUGCa---GCGGCC------CCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 166617 | 0.66 | 0.78948 |
Target: 5'- -cCCaGGGCuccgCGuCCGGGaACGUCGGCu -3' miRNA: 3'- cuGG-CCUGca--GC-GGCCCcUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 201331 | 0.66 | 0.797788 |
Target: 5'- uGCCGcGACGUCagcgugGCCGacaucGGGCGgCGGCg -3' miRNA: 3'- cUGGC-CUGCAG------CGGCc----CCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 221683 | 0.66 | 0.781052 |
Target: 5'- gGACgCGGACaccCGCCcGGcGACGcUCGGCc -3' miRNA: 3'- -CUG-GCCUGca-GCGGcCC-CUGC-AGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 130125 | 0.66 | 0.797788 |
Target: 5'- aGCUGGAgG-C-CCGGGGugGUgucgCGGCc -3' miRNA: 3'- cUGGCCUgCaGcGGCCCCugCA----GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 101887 | 0.66 | 0.781052 |
Target: 5'- --gCGGGCGaaaGCgCGGGGACGccgacgggggCGGCg -3' miRNA: 3'- cugGCCUGCag-CG-GCCCCUGCa---------GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 202134 | 0.66 | 0.781052 |
Target: 5'- cGCCGGucuCGgccgcCGCCGcGGGGCGggUGGUc -3' miRNA: 3'- cUGGCCu--GCa----GCGGC-CCCUGCa-GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 156959 | 0.66 | 0.781052 |
Target: 5'- -cCCGGcCGuUCGCC---GACGUCGGCa -3' miRNA: 3'- cuGGCCuGC-AGCGGcccCUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 124695 | 0.66 | 0.772512 |
Target: 5'- gGAuCCGGGCGcaCGCCGuccuGGGGCG-CGuGCa -3' miRNA: 3'- -CU-GGCCUGCa-GCGGC----CCCUGCaGC-CG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 98157 | 0.66 | 0.805971 |
Target: 5'- -cCCGG-CgGUCGCCGcggucuGGACGggcgCGGCg -3' miRNA: 3'- cuGGCCuG-CAGCGGCc-----CCUGCa---GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 189185 | 0.66 | 0.772512 |
Target: 5'- aGCCGGcaagcacccAgGUCGCCGcGGGcggcaugcucgACGUCGGa -3' miRNA: 3'- cUGGCC---------UgCAGCGGC-CCC-----------UGCAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 21259 | 0.66 | 0.797788 |
Target: 5'- gGGCUGGAgCGggaGCgGGGGACGaCaGCa -3' miRNA: 3'- -CUGGCCU-GCag-CGgCCCCUGCaGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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