miRNA display CGI


Results 41 - 60 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 131870 0.66 0.763866
Target:  5'- gGGCCGGAgaCGgggaGCCggagggggagaGGGGGgGUCGGUc -3'
miRNA:   3'- -CUGGCCU--GCag--CGG-----------CCCCUgCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 82205 0.66 0.805971
Target:  5'- gGGCCGG-CGUCcucCCGGGG-CGggaagCGGg -3'
miRNA:   3'- -CUGGCCuGCAGc--GGCCCCuGCa----GCCg -5'
8946 5' -62.1 NC_002512.2 + 229576 0.66 0.805971
Target:  5'- cGGCa-GAgGagGCCGGaGGGCGUgGGCu -3'
miRNA:   3'- -CUGgcCUgCagCGGCC-CCUGCAgCCG- -5'
8946 5' -62.1 NC_002512.2 + 224934 0.66 0.814021
Target:  5'- gGACCGGGucCGU-GCCGGuGuCGcUCGGCu -3'
miRNA:   3'- -CUGGCCU--GCAgCGGCCcCuGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 72864 0.66 0.780203
Target:  5'- -uCCGGgccGCGUCGCCGuugucgcGGGGC-UCGGg -3'
miRNA:   3'- cuGGCC---UGCAGCGGC-------CCCUGcAGCCg -5'
8946 5' -62.1 NC_002512.2 + 13400 0.66 0.814021
Target:  5'- uACCuGACG-CGCUGcgccucccuguGGGACGcCGGCu -3'
miRNA:   3'- cUGGcCUGCaGCGGC-----------CCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 137176 0.66 0.797788
Target:  5'- -cCCGGACGUcCGUaCGGcGuCGUCGGUc -3'
miRNA:   3'- cuGGCCUGCA-GCG-GCCcCuGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 116705 0.66 0.772512
Target:  5'- gGAgCGGACGgcgaCGCCGGucGCGUcccgcccggccgCGGCg -3'
miRNA:   3'- -CUgGCCUGCa---GCGGCCccUGCA------------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 43055 0.66 0.805159
Target:  5'- cGACgcgcaGGGCcUCGCCGaggcaccggucccGGGGCG-CGGCg -3'
miRNA:   3'- -CUGg----CCUGcAGCGGC-------------CCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 130125 0.66 0.797788
Target:  5'- aGCUGGAgG-C-CCGGGGugGUgucgCGGCc -3'
miRNA:   3'- cUGGCCUgCaGcGGCCCCugCA----GCCG- -5'
8946 5' -62.1 NC_002512.2 + 31801 0.66 0.797788
Target:  5'- cGACgGGGaGaCGCCGGGG-CG-CGGUc -3'
miRNA:   3'- -CUGgCCUgCaGCGGCCCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 29910 0.66 0.797788
Target:  5'- cGCCGGGCG-CGC---GGACG-CGGCg -3'
miRNA:   3'- cUGGCCUGCaGCGgccCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 43538 0.66 0.797788
Target:  5'- cGGCCccgaaGACGUUGUCGcGGAUGaCGGCg -3'
miRNA:   3'- -CUGGc----CUGCAGCGGCcCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 8141 0.66 0.775941
Target:  5'- uGCCGuucGACGgcgcguccgccaggCGCuCGGGGAUcUCGGCg -3'
miRNA:   3'- cUGGC---CUGCa-------------GCG-GCCCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 97863 0.66 0.781052
Target:  5'- uGGCCGacGACGUCGCCGccGAgGUcccccCGGCg -3'
miRNA:   3'- -CUGGC--CUGCAGCGGCccCUgCA-----GCCG- -5'
8946 5' -62.1 NC_002512.2 + 27959 0.66 0.78948
Target:  5'- -cCCGGGCccGUCGCCGauGGGCGgccgGGCg -3'
miRNA:   3'- cuGGCCUG--CAGCGGCc-CCUGCag--CCG- -5'
8946 5' -62.1 NC_002512.2 + 133213 0.66 0.792818
Target:  5'- -uCgGGACGUCGUCcgcccagcgaggacgGGaGGGCGgCGGCg -3'
miRNA:   3'- cuGgCCUGCAGCGG---------------CC-CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 142069 0.66 0.7819
Target:  5'- cGGCCGGGgGaUCGCuCGGGGgugcaaccgaacgcGgacccgguaccgaccCGUCGGCg -3'
miRNA:   3'- -CUGGCCUgC-AGCG-GCCCC--------------U---------------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 90909 0.66 0.772512
Target:  5'- cGGCCGGACuGgcggcCGCgaaCGGGGcCGgcgCGGCc -3'
miRNA:   3'- -CUGGCCUG-Ca----GCG---GCCCCuGCa--GCCG- -5'
8946 5' -62.1 NC_002512.2 + 54673 0.66 0.805971
Target:  5'- gGACCGG-CGga--CGGuGGACG-CGGCg -3'
miRNA:   3'- -CUGGCCuGCagcgGCC-CCUGCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.