miRNA display CGI


Results 41 - 60 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 155380 0.66 0.814021
Target:  5'- -uCgGGGCGgcggCGCCGGcGGGCGaucgCGGa -3'
miRNA:   3'- cuGgCCUGCa---GCGGCC-CCUGCa---GCCg -5'
8946 5' -62.1 NC_002512.2 + 53691 0.66 0.772512
Target:  5'- aGGCUGG-CGUaCGCCGaGGAgcuggagaagcUGUCGGCc -3'
miRNA:   3'- -CUGGCCuGCA-GCGGCcCCU-----------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 86672 0.66 0.763866
Target:  5'- cGAgCGGACGgcgCGCgaGGGGGa--CGGCa -3'
miRNA:   3'- -CUgGCCUGCa--GCGg-CCCCUgcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 21259 0.66 0.797788
Target:  5'- gGGCUGGAgCGggaGCgGGGGACGaCaGCa -3'
miRNA:   3'- -CUGGCCU-GCag-CGgCCCCUGCaGcCG- -5'
8946 5' -62.1 NC_002512.2 + 72864 0.66 0.780203
Target:  5'- -uCCGGgccGCGUCGCCGuugucgcGGGGC-UCGGg -3'
miRNA:   3'- cuGGCC---UGCAGCGGC-------CCCUGcAGCCg -5'
8946 5' -62.1 NC_002512.2 + 54673 0.66 0.805971
Target:  5'- gGACCGG-CGga--CGGuGGACG-CGGCg -3'
miRNA:   3'- -CUGGCCuGCagcgGCC-CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 91839 0.66 0.772512
Target:  5'- -cCCGGAUccgGUC-CCGcaGGAUGUCGGCu -3'
miRNA:   3'- cuGGCCUG---CAGcGGCc-CCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 142069 0.66 0.7819
Target:  5'- cGGCCGGGgGaUCGCuCGGGGgugcaaccgaacgcGgacccgguaccgaccCGUCGGCg -3'
miRNA:   3'- -CUGGCCUgC-AGCG-GCCCC--------------U---------------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 133213 0.66 0.792818
Target:  5'- -uCgGGACGUCGUCcgcccagcgaggacgGGaGGGCGgCGGCg -3'
miRNA:   3'- cuGgCCUGCAGCGG---------------CC-CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 27959 0.66 0.78948
Target:  5'- -cCCGGGCccGUCGCCGauGGGCGgccgGGCg -3'
miRNA:   3'- cuGGCCUG--CAGCGGCc-CCUGCag--CCG- -5'
8946 5' -62.1 NC_002512.2 + 137291 0.66 0.781052
Target:  5'- cGACCGGccuCGggacCGCCGccccucccGGccgcGGCGUCGGCg -3'
miRNA:   3'- -CUGGCCu--GCa---GCGGC--------CC----CUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 8141 0.66 0.775941
Target:  5'- uGCCGuucGACGgcgcguccgccaggCGCuCGGGGAUcUCGGCg -3'
miRNA:   3'- cUGGC---CUGCa-------------GCG-GCCCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 43538 0.66 0.797788
Target:  5'- cGGCCccgaaGACGUUGUCGcGGAUGaCGGCg -3'
miRNA:   3'- -CUGGc----CUGCAGCGGCcCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 29910 0.66 0.797788
Target:  5'- cGCCGGGCG-CGC---GGACG-CGGCg -3'
miRNA:   3'- cUGGCCUGCaGCGgccCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 31801 0.66 0.797788
Target:  5'- cGACgGGGaGaCGCCGGGG-CG-CGGUc -3'
miRNA:   3'- -CUGgCCUgCaGCGGCCCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 130125 0.66 0.797788
Target:  5'- aGCUGGAgG-C-CCGGGGugGUgucgCGGCc -3'
miRNA:   3'- cUGGCCUgCaGcGGCCCCugCA----GCCG- -5'
8946 5' -62.1 NC_002512.2 + 43055 0.66 0.805159
Target:  5'- cGACgcgcaGGGCcUCGCCGaggcaccggucccGGGGCG-CGGCg -3'
miRNA:   3'- -CUGg----CCUGcAGCGGC-------------CCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 116705 0.66 0.772512
Target:  5'- gGAgCGGACGgcgaCGCCGGucGCGUcccgcccggccgCGGCg -3'
miRNA:   3'- -CUgGCCUGCa---GCGGCCccUGCA------------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 137176 0.66 0.797788
Target:  5'- -cCCGGACGUcCGUaCGGcGuCGUCGGUc -3'
miRNA:   3'- cuGGCCUGCA-GCG-GCCcCuGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 104777 0.66 0.797788
Target:  5'- -gUCGGACGgcgCGUggCGGGGuccGCGcgCGGCg -3'
miRNA:   3'- cuGGCCUGCa--GCG--GCCCC---UGCa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.