miRNA display CGI


Results 41 - 60 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 24841 0.68 0.673172
Target:  5'- -uCCGGGCccgcggccgGUCGgCGGcGGACG-CGGCc -3'
miRNA:   3'- cuGGCCUG---------CAGCgGCC-CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 24907 0.66 0.805971
Target:  5'- -uCCGGucccCGUCGCCcGcGGCGUCGGg -3'
miRNA:   3'- cuGGCCu---GCAGCGGcCcCUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 25065 0.68 0.690832
Target:  5'- -cCCGGACGgagcCGCCGcgcccccGGGACG-CGGa -3'
miRNA:   3'- cuGGCCUGCa---GCGGC-------CCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 26639 0.69 0.64885
Target:  5'- uACCGGgugauccaccagcgcACGagGUCGGGGGCGggcucgaagCGGCa -3'
miRNA:   3'- cUGGCC---------------UGCagCGGCCCCUGCa--------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 27860 0.67 0.755122
Target:  5'- aGCCGGACcg-GCgGGGGACc-CGGCc -3'
miRNA:   3'- cUGGCCUGcagCGgCCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 27959 0.66 0.78948
Target:  5'- -cCCGGGCccGUCGCCGauGGGCGgccgGGCg -3'
miRNA:   3'- cuGGCCUG--CAGCGGCc-CCUGCag--CCG- -5'
8946 5' -62.1 NC_002512.2 + 29738 0.66 0.772512
Target:  5'- uACCGuGGCGgcgCGCgaGGGGGCc-CGGCg -3'
miRNA:   3'- cUGGC-CUGCa--GCGg-CCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 29910 0.66 0.797788
Target:  5'- cGCCGGGCG-CGC---GGACG-CGGCg -3'
miRNA:   3'- cUGGCCUGCaGCGgccCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 30536 0.69 0.626329
Target:  5'- aGCCGGugaucuCGuUCGCCGuGGGCG-CGGCc -3'
miRNA:   3'- cUGGCCu-----GC-AGCGGCcCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 31801 0.66 0.797788
Target:  5'- cGACgGGGaGaCGCCGGGG-CG-CGGUc -3'
miRNA:   3'- -CUGgCCUgCaGCGGCCCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 32567 0.73 0.39774
Target:  5'- cGCCGGGCGccgcgggUGCCGGGGucgUGUCGGa -3'
miRNA:   3'- cUGGCCUGCa------GCGGCCCCu--GCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 33686 0.71 0.497774
Target:  5'- cGCCGGAgGcUCGCCaGGGACc-CGGCc -3'
miRNA:   3'- cUGGCCUgC-AGCGGcCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 34827 0.69 0.598218
Target:  5'- cGACCGGACGacccuccCGcCCGcGGGcCG-CGGCg -3'
miRNA:   3'- -CUGGCCUGCa------GC-GGC-CCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 37476 0.69 0.645099
Target:  5'- aGACCGGACG-CGUCGGaaGGACGguaaacGCg -3'
miRNA:   3'- -CUGGCCUGCaGCGGCC--CCUGCagc---CG- -5'
8946 5' -62.1 NC_002512.2 + 40193 0.7 0.579572
Target:  5'- -cCCGGACGUCGacgaCGaGGGcCGcCGGUa -3'
miRNA:   3'- cuGGCCUGCAGCg---GC-CCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 42065 0.66 0.805971
Target:  5'- -uCCGGACgGUCuggacgaccaggGCCGGGGugGgcaggaaGGUg -3'
miRNA:   3'- cuGGCCUG-CAG------------CGGCCCCugCag-----CCG- -5'
8946 5' -62.1 NC_002512.2 + 42567 0.68 0.691758
Target:  5'- uGACaCGGGCGggCGCCGcGaGGCGagCGGCg -3'
miRNA:   3'- -CUG-GCCUGCa-GCGGCcC-CUGCa-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 43055 0.66 0.805159
Target:  5'- cGACgcgcaGGGCcUCGCCGaggcaccggucccGGGGCG-CGGCg -3'
miRNA:   3'- -CUGg----CCUGcAGCGGC-------------CCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 43145 0.71 0.524548
Target:  5'- uGCCGGGCGUggUGCCcGcGACGUUGGCc -3'
miRNA:   3'- cUGGCCUGCA--GCGGcCcCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 43538 0.66 0.797788
Target:  5'- cGGCCccgaaGACGUUGUCGcGGAUGaCGGCg -3'
miRNA:   3'- -CUGGc----CUGCAGCGGCcCCUGCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.