miRNA display CGI


Results 21 - 40 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 10427 0.71 0.488985
Target:  5'- cGACCGcGuCGUCGCCgucgggcacGGGGGCG-CGGa -3'
miRNA:   3'- -CUGGC-CuGCAGCGG---------CCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 10588 0.68 0.654474
Target:  5'- uGGCCgcGGACGaCGaagCGGGccacGGCGUCGGCg -3'
miRNA:   3'- -CUGG--CCUGCaGCg--GCCC----CUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 11019 0.67 0.737368
Target:  5'- cGCaCGG-CGUCGgugccCCGGGcGAccuCGUCGGCg -3'
miRNA:   3'- cUG-GCCuGCAGC-----GGCCC-CU---GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 11452 0.66 0.805971
Target:  5'- --gCGGACGgggGCCGGGGAaGg-GGCg -3'
miRNA:   3'- cugGCCUGCag-CGGCCCCUgCagCCG- -5'
8946 5' -62.1 NC_002512.2 + 13400 0.66 0.814021
Target:  5'- uACCuGACG-CGCUGcgccucccuguGGGACGcCGGCu -3'
miRNA:   3'- cUGGcCUGCaGCGGC-----------CCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 14491 0.67 0.719305
Target:  5'- gGGCaGGGCGaacauggUGCCGGGGcugGCGaCGGCg -3'
miRNA:   3'- -CUGgCCUGCa------GCGGCCCC---UGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 15561 0.67 0.728371
Target:  5'- aGGCCGGA-GUCGUCGGccugcuCGUgCGGCa -3'
miRNA:   3'- -CUGGCCUgCAGCGGCCccu---GCA-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 16505 0.68 0.672239
Target:  5'- gGGCCGGACcgacgauagcacuGUCGCCGccagcgcGGGCGUCccccuGGCu -3'
miRNA:   3'- -CUGGCCUG-------------CAGCGGCc------CCUGCAG-----CCG- -5'
8946 5' -62.1 NC_002512.2 + 17032 0.67 0.755122
Target:  5'- ---gGGACGcUCGgaGGGGACGgaCGGCg -3'
miRNA:   3'- cuggCCUGC-AGCggCCCCUGCa-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 17858 0.66 0.762996
Target:  5'- -cCCGGGCGcggUGCUcgcgcagggcccgGGGGACGUgauaggCGGCg -3'
miRNA:   3'- cuGGCCUGCa--GCGG-------------CCCCUGCA------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 18842 0.66 0.78948
Target:  5'- cGAgCGGAgGUaGCgGGGGACGgcCGcGCa -3'
miRNA:   3'- -CUgGCCUgCAgCGgCCCCUGCa-GC-CG- -5'
8946 5' -62.1 NC_002512.2 + 19357 0.76 0.25676
Target:  5'- uGCCGGAC--CGUCGGGGGC-UCGGCg -3'
miRNA:   3'- cUGGCCUGcaGCGGCCCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 20777 0.73 0.413518
Target:  5'- -cCCGGACGUCGggacaCGGGGugacgacccggACGUCGGg -3'
miRNA:   3'- cuGGCCUGCAGCg----GCCCC-----------UGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 20819 0.68 0.700991
Target:  5'- -cCCGcacgaaGACGUCGUCGGaGGAgcCGUCGGa -3'
miRNA:   3'- cuGGC------CUGCAGCGGCC-CCU--GCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 21217 0.67 0.737368
Target:  5'- cGGCCcccgGGACGcCGCCcGGGGCGgagaCGGg -3'
miRNA:   3'- -CUGG----CCUGCaGCGGcCCCUGCa---GCCg -5'
8946 5' -62.1 NC_002512.2 + 21259 0.66 0.797788
Target:  5'- gGGCUGGAgCGggaGCgGGGGACGaCaGCa -3'
miRNA:   3'- -CUGGCCU-GCag-CGgCCCCUGCaGcCG- -5'
8946 5' -62.1 NC_002512.2 + 22550 0.67 0.745399
Target:  5'- gGGCCGGGgacuacuCGUCGCCGGuGGugcUGgugaaCGGCu -3'
miRNA:   3'- -CUGGCCU-------GCAGCGGCC-CCu--GCa----GCCG- -5'
8946 5' -62.1 NC_002512.2 + 22990 0.7 0.561053
Target:  5'- gGACgCGGGCGgCGCUGGuGAccuaccCGUCGGCg -3'
miRNA:   3'- -CUG-GCCUGCaGCGGCCcCU------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 24206 0.66 0.814021
Target:  5'- cGACaGGACGgugaCGCCGGaGcuguccgaGGCGUCGGg -3'
miRNA:   3'- -CUGgCCUGCa---GCGGCC-C--------CUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 24585 0.66 0.78948
Target:  5'- -cCCGGucCGUCGaCgCGGGGACcgcuggGUCGGa -3'
miRNA:   3'- cuGGCCu-GCAGC-G-GCCCCUG------CAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.