miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 147 0.72 0.454591
Target:  5'- aGCCGGGCGgggCGCCGGcGGAgGagCGcGCg -3'
miRNA:   3'- cUGGCCUGCa--GCGGCC-CCUgCa-GC-CG- -5'
8946 5' -62.1 NC_002512.2 + 173 0.66 0.805971
Target:  5'- cGGCa-GAgGagGCCGGaGGGCGUgGGCu -3'
miRNA:   3'- -CUGgcCUgCagCGGCC-CCUGCAgCCG- -5'
8946 5' -62.1 NC_002512.2 + 2087 0.68 0.673172
Target:  5'- cGCCGGGCGggaGCgGGcGGuACGgccgCGGCu -3'
miRNA:   3'- cUGGCCUGCag-CGgCC-CC-UGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 2808 0.66 0.805971
Target:  5'- cGGCCGGcgggacccggcGCGggCGCgGGcccGGACGaCGGCg -3'
miRNA:   3'- -CUGGCC-----------UGCa-GCGgCC---CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 3189 0.66 0.763866
Target:  5'- cGCUcGACGcCGCCGcGGGCGaCGGCc -3'
miRNA:   3'- cUGGcCUGCaGCGGCcCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 3233 0.69 0.616947
Target:  5'- gGACCcGGCG-CGUCGGGuGACGaCGGUc -3'
miRNA:   3'- -CUGGcCUGCaGCGGCCC-CUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 4208 0.69 0.607575
Target:  5'- aGAUCGGugGgagCgGCCGcggggagcGGGACGUCGaGCc -3'
miRNA:   3'- -CUGGCCugCa--G-CGGC--------CCCUGCAGC-CG- -5'
8946 5' -62.1 NC_002512.2 + 4437 0.77 0.240329
Target:  5'- aGACCGG-CGgggUGCCGGGcgcgggggucGGCGUCGGCc -3'
miRNA:   3'- -CUGGCCuGCa--GCGGCCC----------CUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 5094 0.7 0.559209
Target:  5'- cGCCGG-CGUCGgCGcGGGcgggagagacauCGUCGGCa -3'
miRNA:   3'- cUGGCCuGCAGCgGC-CCCu-----------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 5905 0.7 0.588881
Target:  5'- cGGCgGGGCG-CGCgGGGGAUa-CGGCc -3'
miRNA:   3'- -CUGgCCUGCaGCGgCCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 6095 0.67 0.755122
Target:  5'- cGCCGccGACGUCcCCGGcGACGUcCGGUc -3'
miRNA:   3'- cUGGC--CUGCAGcGGCCcCUGCA-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 6340 0.68 0.682482
Target:  5'- gGACCGGGCGcgggGCCGGcGGGCcgcgGGCg -3'
miRNA:   3'- -CUGGCCUGCag--CGGCC-CCUGcag-CCG- -5'
8946 5' -62.1 NC_002512.2 + 6410 0.68 0.690832
Target:  5'- aGGCgGcGGCGgCGCUGGGGAaggcggcCGUCuGGCg -3'
miRNA:   3'- -CUGgC-CUGCaGCGGCCCCU-------GCAG-CCG- -5'
8946 5' -62.1 NC_002512.2 + 7030 0.72 0.429675
Target:  5'- uGCCGGGC-UCGUCGuucGGGACGaagCGGCa -3'
miRNA:   3'- cUGGCCUGcAGCGGC---CCCUGCa--GCCG- -5'
8946 5' -62.1 NC_002512.2 + 7242 0.68 0.663833
Target:  5'- cGGCCGGcCGUCG-CGGcGGAgcggcgucCGUCGGg -3'
miRNA:   3'- -CUGGCCuGCAGCgGCC-CCU--------GCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 7751 0.67 0.746287
Target:  5'- ---gGGGCGgaGCCGGGGcgguaGUCGGCc -3'
miRNA:   3'- cuggCCUGCagCGGCCCCug---CAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 8141 0.66 0.775941
Target:  5'- uGCCGuucGACGgcgcguccgccaggCGCuCGGGGAUcUCGGCg -3'
miRNA:   3'- cUGGC---CUGCa-------------GCG-GCCCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 8194 0.71 0.506633
Target:  5'- aGGCCGaGCGUCGCCGGGcgGGUGUCcGCg -3'
miRNA:   3'- -CUGGCcUGCAGCGGCCC--CUGCAGcCG- -5'
8946 5' -62.1 NC_002512.2 + 8728 0.67 0.725658
Target:  5'- cGGCCGcGCG-CGCCcgcccgucgacgacGGGGACG-CGGUc -3'
miRNA:   3'- -CUGGCcUGCaGCGG--------------CCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 8981 0.68 0.700991
Target:  5'- cGACUGGACGaacUCGuaGaGGuCGUCGGCc -3'
miRNA:   3'- -CUGGCCUGC---AGCggCcCCuGCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.