miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 229576 0.66 0.805971
Target:  5'- cGGCa-GAgGagGCCGGaGGGCGUgGGCu -3'
miRNA:   3'- -CUGgcCUgCagCGGCC-CCUGCAgCCG- -5'
8946 5' -62.1 NC_002512.2 + 229550 0.72 0.454591
Target:  5'- aGCCGGGCGgggCGCCGGcGGAgGagCGcGCg -3'
miRNA:   3'- cUGGCCUGCa--GCGGCC-CCUgCa-GC-CG- -5'
8946 5' -62.1 NC_002512.2 + 228411 0.68 0.700991
Target:  5'- ---gGGACGgggCGCUGGGGgGCGggGGCg -3'
miRNA:   3'- cuggCCUGCa--GCGGCCCC-UGCagCCG- -5'
8946 5' -62.1 NC_002512.2 + 228035 0.73 0.389998
Target:  5'- cGACCGGACGgcggcgagaCGCCcGcGGACGgcugCGGCg -3'
miRNA:   3'- -CUGGCCUGCa--------GCGGcC-CCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 227909 0.66 0.78948
Target:  5'- aGGCCGGAgaCGgacgCGCCGccuccGACGcCGGCg -3'
miRNA:   3'- -CUGGCCU--GCa---GCGGCcc---CUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 227690 0.73 0.42155
Target:  5'- cGACCGaGACGacgacggCGgCGGGGGCG-CGGUa -3'
miRNA:   3'- -CUGGC-CUGCa------GCgGCCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 227461 0.74 0.345662
Target:  5'- uGCCGGGggaGagGCCGGGGGCGgcCGGCc -3'
miRNA:   3'- cUGGCCUg--CagCGGCCCCUGCa-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 227353 0.7 0.579572
Target:  5'- aGACgGGACGgaggaggC-CCGGGGcCGcCGGCg -3'
miRNA:   3'- -CUGgCCUGCa------GcGGCCCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 227172 0.69 0.598218
Target:  5'- cGGCaGGACGagcaGCCGGGGGag-CGGCa -3'
miRNA:   3'- -CUGgCCUGCag--CGGCCCCUgcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 227003 0.69 0.616947
Target:  5'- -gUCGGACGagGacaCCGGGGACGaguUCGGUc -3'
miRNA:   3'- cuGGCCUGCagC---GGCCCCUGC---AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 226758 0.71 0.515559
Target:  5'- cGGCCGGACGaCGCggaGGgcgaGGACGUCucgGGCg -3'
miRNA:   3'- -CUGGCCUGCaGCGg--CC----CCUGCAG---CCG- -5'
8946 5' -62.1 NC_002512.2 + 226719 0.66 0.763866
Target:  5'- cGACgGGAgGcCG-CGGGcGACGaCGGCg -3'
miRNA:   3'- -CUGgCCUgCaGCgGCCC-CUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 226689 0.75 0.298659
Target:  5'- cGCCGGGcCGUCGcCCGcGGcGGCGUCGaGCg -3'
miRNA:   3'- cUGGCCU-GCAGC-GGC-CC-CUGCAGC-CG- -5'
8946 5' -62.1 NC_002512.2 + 226390 0.66 0.814021
Target:  5'- gGGCCGacGACGgCGCCGGGaccCGUCGcGUc -3'
miRNA:   3'- -CUGGC--CUGCaGCGGCCCcu-GCAGC-CG- -5'
8946 5' -62.1 NC_002512.2 + 226190 0.7 0.570294
Target:  5'- cGACCGGGuCGaccucCGUCGGGGACGggaGGa -3'
miRNA:   3'- -CUGGCCU-GCa----GCGGCCCCUGCag-CCg -5'
8946 5' -62.1 NC_002512.2 + 225532 0.68 0.682482
Target:  5'- gGACgGGACGgcgggaGCgCGGaGGACGacuucuUCGGCg -3'
miRNA:   3'- -CUGgCCUGCag----CG-GCC-CCUGC------AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 225405 0.68 0.673172
Target:  5'- ---gGGACGgCGCCGGGGucgGgGUCGGg -3'
miRNA:   3'- cuggCCUGCaGCGGCCCC---UgCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 224934 0.66 0.814021
Target:  5'- gGACCGGGucCGU-GCCGGuGuCGcUCGGCu -3'
miRNA:   3'- -CUGGCCU--GCAgCGGCCcCuGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 224619 0.68 0.673172
Target:  5'- cGACCGGGCucgggGUCGCCGccgcGGCcUCGGCc -3'
miRNA:   3'- -CUGGCCUG-----CAGCGGCcc--CUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 224543 0.7 0.561053
Target:  5'- aGACCGauACgGUCGCgGGGGAU-UCGGCg -3'
miRNA:   3'- -CUGGCc-UG-CAGCGgCCCCUGcAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.