miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 100046 0.73 0.39774
Target:  5'- cGCCGGGCGcugagaCG-CGGGGGCGgCGGCg -3'
miRNA:   3'- cUGGCCUGCa-----GCgGCCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 134311 0.74 0.352795
Target:  5'- ---aGGACGUCGCCGGGGc---CGGCg -3'
miRNA:   3'- cuggCCUGCAGCGGCCCCugcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 121833 0.74 0.352795
Target:  5'- cGGCCGGACGggggggaggaCGgCGGGGAgGaCGGCg -3'
miRNA:   3'- -CUGGCCUGCa---------GCgGCCCCUgCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 90064 0.74 0.36737
Target:  5'- cGACCauGACGuUCGCCGGGGGCGggUGGa -3'
miRNA:   3'- -CUGGc-CUGC-AGCGGCCCCUGCa-GCCg -5'
8946 5' -62.1 NC_002512.2 + 99886 0.74 0.36885
Target:  5'- gGACCGGgaggaggcGCGgcccgucgagggCGCCGGGGgcccgccgaagggcgGCGUCGGCu -3'
miRNA:   3'- -CUGGCC--------UGCa-----------GCGGCCCC---------------UGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 106620 0.73 0.381596
Target:  5'- -uCUGGAUGUcCGCCGGGGgguagcgGCGcCGGCu -3'
miRNA:   3'- cuGGCCUGCA-GCGGCCCC-------UGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 91994 0.73 0.389229
Target:  5'- -uCCGGgucucccGCGUCGCCGGcggcggacucgcGGGCGUCGGg -3'
miRNA:   3'- cuGGCC-------UGCAGCGGCC------------CCUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 81973 0.73 0.389998
Target:  5'- -cCCGGGCGggugguggCGgCGGGGGCGUCucgggGGCg -3'
miRNA:   3'- cuGGCCUGCa-------GCgGCCCCUGCAG-----CCG- -5'
8946 5' -62.1 NC_002512.2 + 32567 0.73 0.39774
Target:  5'- cGCCGGGCGccgcgggUGCCGGGGucgUGUCGGa -3'
miRNA:   3'- cUGGCCUGCa------GCGGCCCCu--GCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 103071 0.74 0.348503
Target:  5'- cGACgGGACGgacuacgggaggcgaUC-CCGGGGACGggcgCGGCa -3'
miRNA:   3'- -CUGgCCUGC---------------AGcGGCCCCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 82415 0.74 0.348503
Target:  5'- aGCCGGugGUccCGCggcggaggggacgaGGGGGCGUCGGUc -3'
miRNA:   3'- cUGGCCugCA--GCGg-------------CCCCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 19357 0.76 0.25676
Target:  5'- uGCCGGAC--CGUCGGGGGC-UCGGCg -3'
miRNA:   3'- cUGGCCUGcaGCGGCCCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 120634 0.79 0.174948
Target:  5'- cGGCgGGACGggaCGCCGGGGGCG-CGGa -3'
miRNA:   3'- -CUGgCCUGCa--GCGGCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 81842 0.79 0.183212
Target:  5'- uGCCGGACcggGUCGGGGAgCGUCGGCg -3'
miRNA:   3'- cUGGCCUGcagCGGCCCCU-GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 121882 0.78 0.196257
Target:  5'- ---gGGAgGUCGCgGGGGACGcUCGGCg -3'
miRNA:   3'- cuggCCUgCAGCGgCCCCUGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 95094 0.78 0.196257
Target:  5'- aGACCGG-CGUCGggcCCGGGGACG-CGGg -3'
miRNA:   3'- -CUGGCCuGCAGC---GGCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 118601 0.78 0.210104
Target:  5'- -cCCGGGCGUCugGCCGcGGGACGUCGa- -3'
miRNA:   3'- cuGGCCUGCAG--CGGC-CCCUGCAGCcg -5'
8946 5' -62.1 NC_002512.2 + 67761 0.77 0.224786
Target:  5'- aGCCGGGguCGUcuccggCGCCGGGGuCGUCGGUg -3'
miRNA:   3'- cUGGCCU--GCA------GCGGCCCCuGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 72769 0.77 0.231931
Target:  5'- cGACCcccgacgccgggagGGACGUCGCCGGgacgggcccgccguGGGCGcCGGCg -3'
miRNA:   3'- -CUGG--------------CCUGCAGCGGCC--------------CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 4437 0.77 0.240329
Target:  5'- aGACCGG-CGgggUGCCGGGcgcgggggucGGCGUCGGCc -3'
miRNA:   3'- -CUGGCCuGCa--GCGGCCC----------CUGCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.