miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 226390 0.66 0.814021
Target:  5'- gGGCCGacGACGgCGCCGGGaccCGUCGcGUc -3'
miRNA:   3'- -CUGGC--CUGCaGCGGCCCcu-GCAGC-CG- -5'
8946 5' -62.1 NC_002512.2 + 208422 0.66 0.786964
Target:  5'- --aCGGGCGccgcucccggCGCCGGcccccgaucgagucGGACGUCGGg -3'
miRNA:   3'- cugGCCUGCa---------GCGGCC--------------CCUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 156959 0.66 0.781052
Target:  5'- -cCCGGcCGuUCGCC---GACGUCGGCa -3'
miRNA:   3'- cuGGCCuGC-AGCGGcccCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 223784 1.11 0.001327
Target:  5'- gGACCGGACGUCGCCGGGGACGUCGGCg -3'
miRNA:   3'- -CUGGCCUGCAGCGGCCCCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 97787 0.66 0.813222
Target:  5'- cGGCCGaGACGgacgagaccgcUCGCugaacucCGGGGACG-CGGa -3'
miRNA:   3'- -CUGGC-CUGC-----------AGCG-------GCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 201848 0.66 0.81162
Target:  5'- cGGCCGGcaGC-UCGCCuGGGGccugcgguccgaggACGgCGGCg -3'
miRNA:   3'- -CUGGCC--UGcAGCGG-CCCC--------------UGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 193870 0.66 0.797788
Target:  5'- cAUCGGACG-CGgCGGuGGACGacgCGGg -3'
miRNA:   3'- cUGGCCUGCaGCgGCC-CCUGCa--GCCg -5'
8946 5' -62.1 NC_002512.2 + 201331 0.66 0.797788
Target:  5'- uGCCGcGACGUCagcgugGCCGacaucGGGCGgCGGCg -3'
miRNA:   3'- cUGGC-CUGCAG------CGGCc----CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 165705 0.66 0.797788
Target:  5'- cGugCGucugcuuCGUCGUCGGGGG-GUCGGg -3'
miRNA:   3'- -CugGCcu-----GCAGCGGCCCCUgCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 119561 0.66 0.78948
Target:  5'- gGACCGGGCGga-CCGcGGGAgccCGGCg -3'
miRNA:   3'- -CUGGCCUGCagcGGC-CCCUgcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 166617 0.66 0.78948
Target:  5'- -cCCaGGGCuccgCGuCCGGGaACGUCGGCu -3'
miRNA:   3'- cuGG-CCUGca--GC-GGCCCcUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 124268 0.66 0.797788
Target:  5'- cACCcGACGgcggCGUCGGacccGGGCGUgCGGCu -3'
miRNA:   3'- cUGGcCUGCa---GCGGCC----CCUGCA-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 224934 0.66 0.814021
Target:  5'- gGACCGGGucCGU-GCCGGuGuCGcUCGGCu -3'
miRNA:   3'- -CUGGCCU--GCAgCGGCCcCuGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 117004 0.66 0.78948
Target:  5'- cGACC-GACGagaaCGCCGGgccggaGGACG-CGGCc -3'
miRNA:   3'- -CUGGcCUGCa---GCGGCC------CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 170799 0.66 0.814021
Target:  5'- cGACgGcGGCGaggggagCGaCGGGGGCGgcagCGGCg -3'
miRNA:   3'- -CUGgC-CUGCa------GCgGCCCCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 113154 0.66 0.797788
Target:  5'- cGCCGG-CcUCGCCGcggccgggcGGGACGcgacCGGCg -3'
miRNA:   3'- cUGGCCuGcAGCGGC---------CCCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 227909 0.66 0.78948
Target:  5'- aGGCCGGAgaCGgacgCGCCGccuccGACGcCGGCg -3'
miRNA:   3'- -CUGGCCU--GCa---GCGGCcc---CUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 214411 0.66 0.784437
Target:  5'- gGGCCGGAgCG-CGCCGcgcccgaGGAccgcguccccgucuaCGUCGGCg -3'
miRNA:   3'- -CUGGCCU-GCaGCGGCc------CCU---------------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 108164 0.66 0.814021
Target:  5'- -uCCGG-CGUCGCCGGcGccuucugcGGCGUUcagGGCg -3'
miRNA:   3'- cuGGCCuGCAGCGGCC-C--------CUGCAG---CCG- -5'
8946 5' -62.1 NC_002512.2 + 98157 0.66 0.805971
Target:  5'- -cCCGG-CgGUCGCCGcggucuGGACGggcgCGGCg -3'
miRNA:   3'- cuGGCCuG-CAGCGGCc-----CCUGCa---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.