Results 1 - 20 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 5' | -62.1 | NC_002512.2 | + | 227909 | 0.66 | 0.78948 |
Target: 5'- aGGCCGGAgaCGgacgCGCCGccuccGACGcCGGCg -3' miRNA: 3'- -CUGGCCU--GCa---GCGGCcc---CUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 226390 | 0.66 | 0.814021 |
Target: 5'- gGGCCGacGACGgCGCCGGGaccCGUCGcGUc -3' miRNA: 3'- -CUGGC--CUGCaGCGGCCCcu-GCAGC-CG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 224934 | 0.66 | 0.814021 |
Target: 5'- gGACCGGGucCGU-GCCGGuGuCGcUCGGCu -3' miRNA: 3'- -CUGGCCU--GCAgCGGCCcCuGC-AGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 113154 | 0.66 | 0.797788 |
Target: 5'- cGCCGG-CcUCGCCGcggccgggcGGGACGcgacCGGCg -3' miRNA: 3'- cUGGCCuGcAGCGGC---------CCCUGCa---GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 124268 | 0.66 | 0.797788 |
Target: 5'- cACCcGACGgcggCGUCGGacccGGGCGUgCGGCu -3' miRNA: 3'- cUGGcCUGCa---GCGGCC----CCUGCA-GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 170799 | 0.66 | 0.814021 |
Target: 5'- cGACgGcGGCGaggggagCGaCGGGGGCGgcagCGGCg -3' miRNA: 3'- -CUGgC-CUGCa------GCgGCCCCUGCa---GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 98157 | 0.66 | 0.805971 |
Target: 5'- -cCCGG-CgGUCGCCGcggucuGGACGggcgCGGCg -3' miRNA: 3'- cuGGCCuG-CAGCGGCc-----CCUGCa---GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 201331 | 0.66 | 0.797788 |
Target: 5'- uGCCGcGACGUCagcgugGCCGacaucGGGCGgCGGCg -3' miRNA: 3'- cUGGC-CUGCAG------CGGCc----CCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 117004 | 0.66 | 0.78948 |
Target: 5'- cGACC-GACGagaaCGCCGGgccggaGGACG-CGGCc -3' miRNA: 3'- -CUGGcCUGCa---GCGGCC------CCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 214411 | 0.66 | 0.784437 |
Target: 5'- gGGCCGGAgCG-CGCCGcgcccgaGGAccgcguccccgucuaCGUCGGCg -3' miRNA: 3'- -CUGGCCU-GCaGCGGCc------CCU---------------GCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 223784 | 1.11 | 0.001327 |
Target: 5'- gGACCGGACGUCGCCGGGGACGUCGGCg -3' miRNA: 3'- -CUGGCCUGCAGCGGCCCCUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 97787 | 0.66 | 0.813222 |
Target: 5'- cGGCCGaGACGgacgagaccgcUCGCugaacucCGGGGACG-CGGa -3' miRNA: 3'- -CUGGC-CUGC-----------AGCG-------GCCCCUGCaGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 108164 | 0.66 | 0.814021 |
Target: 5'- -uCCGG-CGUCGCCGGcGccuucugcGGCGUUcagGGCg -3' miRNA: 3'- cuGGCCuGCAGCGGCC-C--------CUGCAG---CCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 168993 | 0.66 | 0.792818 |
Target: 5'- cGACCGaGCGgucgcgCGCCGGcucggcgauccgggcGGGCGUCcGCg -3' miRNA: 3'- -CUGGCcUGCa-----GCGGCC---------------CCUGCAGcCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 166617 | 0.66 | 0.78948 |
Target: 5'- -cCCaGGGCuccgCGuCCGGGaACGUCGGCu -3' miRNA: 3'- cuGG-CCUGca--GC-GGCCCcUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 201848 | 0.66 | 0.81162 |
Target: 5'- cGGCCGGcaGC-UCGCCuGGGGccugcgguccgaggACGgCGGCg -3' miRNA: 3'- -CUGGCC--UGcAGCGG-CCCC--------------UGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 208422 | 0.66 | 0.786964 |
Target: 5'- --aCGGGCGccgcucccggCGCCGGcccccgaucgagucGGACGUCGGg -3' miRNA: 3'- cugGCCUGCa---------GCGGCC--------------CCUGCAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 156959 | 0.66 | 0.781052 |
Target: 5'- -cCCGGcCGuUCGCC---GACGUCGGCa -3' miRNA: 3'- cuGGCCuGC-AGCGGcccCUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 193870 | 0.66 | 0.797788 |
Target: 5'- cAUCGGACG-CGgCGGuGGACGacgCGGg -3' miRNA: 3'- cUGGCCUGCaGCgGCC-CCUGCa--GCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 165705 | 0.66 | 0.797788 |
Target: 5'- cGugCGucugcuuCGUCGUCGGGGG-GUCGGg -3' miRNA: 3'- -CugGCcu-----GCAGCGGCCCCUgCAGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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