miRNA display CGI


Results 21 - 40 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 101887 0.66 0.781052
Target:  5'- --gCGGGCGaaaGCgCGGGGACGccgacgggggCGGCg -3'
miRNA:   3'- cugGCCUGCag-CG-GCCCCUGCa---------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 156959 0.66 0.781052
Target:  5'- -cCCGGcCGuUCGCC---GACGUCGGCa -3'
miRNA:   3'- cuGGCCuGC-AGCGGcccCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 124268 0.66 0.797788
Target:  5'- cACCcGACGgcggCGUCGGacccGGGCGUgCGGCu -3'
miRNA:   3'- cUGGcCUGCa---GCGGCC----CCUGCA-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 108164 0.66 0.814021
Target:  5'- -uCCGG-CGUCGCCGGcGccuucugcGGCGUUcagGGCg -3'
miRNA:   3'- cuGGCCuGCAGCGGCC-C--------CUGCAG---CCG- -5'
8946 5' -62.1 NC_002512.2 + 194709 0.66 0.763866
Target:  5'- uACUGGAgGaCGCggagGGGGGCG-CGGCu -3'
miRNA:   3'- cUGGCCUgCaGCGg---CCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 224130 0.66 0.763866
Target:  5'- cGGCCguGGACccgCGCCGGGaGGCGgacgcgugaGGCg -3'
miRNA:   3'- -CUGG--CCUGca-GCGGCCC-CUGCag-------CCG- -5'
8946 5' -62.1 NC_002512.2 + 208422 0.66 0.786964
Target:  5'- --aCGGGCGccgcucccggCGCCGGcccccgaucgagucGGACGUCGGg -3'
miRNA:   3'- cugGCCUGCa---------GCGGCC--------------CCUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 170799 0.66 0.814021
Target:  5'- cGACgGcGGCGaggggagCGaCGGGGGCGgcagCGGCg -3'
miRNA:   3'- -CUGgC-CUGCa------GCgGCCCCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 76105 0.66 0.772512
Target:  5'- aGCUGaGGCGggggCGCCGGGGugGugUCGa- -3'
miRNA:   3'- cUGGC-CUGCa---GCGGCCCCugC--AGCcg -5'
8946 5' -62.1 NC_002512.2 + 224934 0.66 0.814021
Target:  5'- gGACCGGGucCGU-GCCGGuGuCGcUCGGCu -3'
miRNA:   3'- -CUGGCCU--GCAgCGGCCcCuGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 214411 0.66 0.784437
Target:  5'- gGGCCGGAgCG-CGCCGcgcccgaGGAccgcguccccgucuaCGUCGGCg -3'
miRNA:   3'- -CUGGCCU-GCaGCGGCc------CCU---------------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 189185 0.66 0.772512
Target:  5'- aGCCGGcaagcacccAgGUCGCCGcGGGcggcaugcucgACGUCGGa -3'
miRNA:   3'- cUGGCC---------UgCAGCGGC-CCC-----------UGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 117004 0.66 0.78948
Target:  5'- cGACC-GACGagaaCGCCGGgccggaGGACG-CGGCc -3'
miRNA:   3'- -CUGGcCUGCa---GCGGCC------CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 165705 0.66 0.797788
Target:  5'- cGugCGucugcuuCGUCGUCGGGGG-GUCGGg -3'
miRNA:   3'- -CugGCcu-----GCAGCGGCCCCUgCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 193870 0.66 0.797788
Target:  5'- cAUCGGACG-CGgCGGuGGACGacgCGGg -3'
miRNA:   3'- cUGGCCUGCaGCgGCC-CCUGCa--GCCg -5'
8946 5' -62.1 NC_002512.2 + 97787 0.66 0.813222
Target:  5'- cGGCCGaGACGgacgagaccgcUCGCugaacucCGGGGACG-CGGa -3'
miRNA:   3'- -CUGGC-CUGC-----------AGCG-------GCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 221299 0.67 0.755122
Target:  5'- aGGCCGGG-GUCGgCGGGGAg--CGGg -3'
miRNA:   3'- -CUGGCCUgCAGCgGCCCCUgcaGCCg -5'
8946 5' -62.1 NC_002512.2 + 201709 0.66 0.762125
Target:  5'- gGAUCGGcggcggcgucguCGUCGCgGGGGgagACGaCGGCu -3'
miRNA:   3'- -CUGGCCu-----------GCAGCGgCCCC---UGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 226719 0.66 0.763866
Target:  5'- cGACgGGAgGcCG-CGGGcGACGaCGGCg -3'
miRNA:   3'- -CUGgCCUgCaGCgGCCC-CUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 198005 0.66 0.763866
Target:  5'- cGAgCGGGCGaCGgaCGGGGGCGagGGa -3'
miRNA:   3'- -CUgGCCUGCaGCg-GCCCCUGCagCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.