Results 21 - 40 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 5' | -62.1 | NC_002512.2 | + | 89425 | 0.74 | 0.338633 |
Target: 5'- aGGCCucGGGCGUCGgCGGGGucACGUCcgGGCc -3' miRNA: 3'- -CUGG--CCUGCAGCgGCCCC--UGCAG--CCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 227461 | 0.74 | 0.345662 |
Target: 5'- uGCCGGGggaGagGCCGGGGGCGgcCGGCc -3' miRNA: 3'- cUGGCCUg--CagCGGCCCCUGCa-GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 82415 | 0.74 | 0.348503 |
Target: 5'- aGCCGGugGUccCGCggcggaggggacgaGGGGGCGUCGGUc -3' miRNA: 3'- cUGGCCugCA--GCGg-------------CCCCUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 103071 | 0.74 | 0.348503 |
Target: 5'- cGACgGGACGgacuacgggaggcgaUC-CCGGGGACGggcgCGGCa -3' miRNA: 3'- -CUGgCCUGC---------------AGcGGCCCCUGCa---GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 134311 | 0.74 | 0.352795 |
Target: 5'- ---aGGACGUCGCCGGGGc---CGGCg -3' miRNA: 3'- cuggCCUGCAGCGGCCCCugcaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 121833 | 0.74 | 0.352795 |
Target: 5'- cGGCCGGACGggggggaggaCGgCGGGGAgGaCGGCg -3' miRNA: 3'- -CUGGCCUGCa---------GCgGCCCCUgCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 157153 | 0.74 | 0.352795 |
Target: 5'- gGGgCGGGCGgcggGCCGGGcGGCGUgGGCg -3' miRNA: 3'- -CUgGCCUGCag--CGGCCC-CUGCAgCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 90064 | 0.74 | 0.36737 |
Target: 5'- cGACCauGACGuUCGCCGGGGGCGggUGGa -3' miRNA: 3'- -CUGGc-CUGC-AGCGGCCCCUGCa-GCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 99886 | 0.74 | 0.36885 |
Target: 5'- gGACCGGgaggaggcGCGgcccgucgagggCGCCGGGGgcccgccgaagggcgGCGUCGGCu -3' miRNA: 3'- -CUGGCC--------UGCa-----------GCGGCCCC---------------UGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 106620 | 0.73 | 0.381596 |
Target: 5'- -uCUGGAUGUcCGCCGGGGgguagcgGCGcCGGCu -3' miRNA: 3'- cuGGCCUGCA-GCGGCCCC-------UGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 158917 | 0.73 | 0.382355 |
Target: 5'- cGGCCGaGuACGgcuUCGgCGGGGGCGcCGGCg -3' miRNA: 3'- -CUGGC-C-UGC---AGCgGCCCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 91994 | 0.73 | 0.389229 |
Target: 5'- -uCCGGgucucccGCGUCGCCGGcggcggacucgcGGGCGUCGGg -3' miRNA: 3'- cuGGCC-------UGCAGCGGCC------------CCUGCAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 81973 | 0.73 | 0.389998 |
Target: 5'- -cCCGGGCGggugguggCGgCGGGGGCGUCucgggGGCg -3' miRNA: 3'- cuGGCCUGCa-------GCgGCCCCUGCAG-----CCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 228035 | 0.73 | 0.389998 |
Target: 5'- cGACCGGACGgcggcgagaCGCCcGcGGACGgcugCGGCg -3' miRNA: 3'- -CUGGCCUGCa--------GCGGcC-CCUGCa---GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 198159 | 0.73 | 0.39774 |
Target: 5'- gGGCCGGGuCGgCGCCGGccGGcggaccuccACGUCGGCg -3' miRNA: 3'- -CUGGCCU-GCaGCGGCC--CC---------UGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 32567 | 0.73 | 0.39774 |
Target: 5'- cGCCGGGCGccgcgggUGCCGGGGucgUGUCGGa -3' miRNA: 3'- cUGGCCUGCa------GCGGCCCCu--GCAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 100046 | 0.73 | 0.39774 |
Target: 5'- cGCCGGGCGcugagaCG-CGGGGGCGgCGGCg -3' miRNA: 3'- cUGGCCUGCa-----GCgGCCCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 106016 | 0.73 | 0.39774 |
Target: 5'- --aCGGGCGgcgcCGCCGGGGGUG-CGGCg -3' miRNA: 3'- cugGCCUGCa---GCGGCCCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 103313 | 0.73 | 0.400865 |
Target: 5'- aGAuCCGGGCGuUCGCCaggacgaccgagcguGGGGGCGUCGa- -3' miRNA: 3'- -CU-GGCCUGC-AGCGG---------------CCCCUGCAGCcg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 167721 | 0.73 | 0.403218 |
Target: 5'- uACCGGucucuCGUCGagCGGGGcgaggagcugccggGCGUCGGCg -3' miRNA: 3'- cUGGCCu----GCAGCg-GCCCC--------------UGCAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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