miRNA display CGI


Results 21 - 40 of 354 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 109009 0.66 0.805971
Target:  5'- cGCCGGcgGCGUCGuCCuGcGGACccgCGGCg -3'
miRNA:   3'- cUGGCC--UGCAGC-GGcC-CCUGca-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 2808 0.66 0.805971
Target:  5'- cGGCCGGcgggacccggcGCGggCGCgGGcccGGACGaCGGCg -3'
miRNA:   3'- -CUGGCC-----------UGCa-GCGgCC---CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 11452 0.66 0.805971
Target:  5'- --gCGGACGgggGCCGGGGAaGg-GGCg -3'
miRNA:   3'- cugGCCUGCag-CGGCCCCUgCagCCG- -5'
8946 5' -62.1 NC_002512.2 + 24907 0.66 0.805971
Target:  5'- -uCCGGucccCGUCGCCcGcGGCGUCGGg -3'
miRNA:   3'- cuGGCCu---GCAGCGGcCcCUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 153352 0.66 0.805159
Target:  5'- -uUCGGAuccuucaucagaaCGUCaGCCGGcaacuGGACGUgCGGCa -3'
miRNA:   3'- cuGGCCU-------------GCAG-CGGCC-----CCUGCA-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 43055 0.66 0.805159
Target:  5'- cGACgcgcaGGGCcUCGCCGaggcaccggucccGGGGCG-CGGCg -3'
miRNA:   3'- -CUGg----CCUGcAGCGGC-------------CCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 137176 0.66 0.797788
Target:  5'- -cCCGGACGUcCGUaCGGcGuCGUCGGUc -3'
miRNA:   3'- cuGGCCUGCA-GCG-GCCcCuGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 43538 0.66 0.797788
Target:  5'- cGGCCccgaaGACGUUGUCGcGGAUGaCGGCg -3'
miRNA:   3'- -CUGGc----CUGCAGCGGCcCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 29910 0.66 0.797788
Target:  5'- cGCCGGGCG-CGC---GGACG-CGGCg -3'
miRNA:   3'- cUGGCCUGCaGCGgccCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 104777 0.66 0.797788
Target:  5'- -gUCGGACGgcgCGUggCGGGGuccGCGcgCGGCg -3'
miRNA:   3'- cuGGCCUGCa--GCG--GCCCC---UGCa-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 130125 0.66 0.797788
Target:  5'- aGCUGGAgG-C-CCGGGGugGUgucgCGGCc -3'
miRNA:   3'- cUGGCCUgCaGcGGCCCCugCA----GCCG- -5'
8946 5' -62.1 NC_002512.2 + 21259 0.66 0.797788
Target:  5'- gGGCUGGAgCGggaGCgGGGGACGaCaGCa -3'
miRNA:   3'- -CUGGCCU-GCag-CGgCCCCUGCaGcCG- -5'
8946 5' -62.1 NC_002512.2 + 124268 0.66 0.797788
Target:  5'- cACCcGACGgcggCGUCGGacccGGGCGUgCGGCu -3'
miRNA:   3'- cUGGcCUGCa---GCGGCC----CCUGCA-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 31801 0.66 0.797788
Target:  5'- cGACgGGGaGaCGCCGGGG-CG-CGGUc -3'
miRNA:   3'- -CUGgCCUgCaGCGGCCCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 165705 0.66 0.797788
Target:  5'- cGugCGucugcuuCGUCGUCGGGGG-GUCGGg -3'
miRNA:   3'- -CugGCcu-----GCAGCGGCCCCUgCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 113154 0.66 0.797788
Target:  5'- cGCCGG-CcUCGCCGcggccgggcGGGACGcgacCGGCg -3'
miRNA:   3'- cUGGCCuGcAGCGGC---------CCCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 193870 0.66 0.797788
Target:  5'- cAUCGGACG-CGgCGGuGGACGacgCGGg -3'
miRNA:   3'- cUGGCCUGCaGCgGCC-CCUGCa--GCCg -5'
8946 5' -62.1 NC_002512.2 + 201331 0.66 0.797788
Target:  5'- uGCCGcGACGUCagcgugGCCGacaucGGGCGgCGGCg -3'
miRNA:   3'- cUGGC-CUGCAG------CGGCc----CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 133213 0.66 0.792818
Target:  5'- -uCgGGACGUCGUCcgcccagcgaggacgGGaGGGCGgCGGCg -3'
miRNA:   3'- cuGgCCUGCAGCGG---------------CC-CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 116888 0.66 0.792818
Target:  5'- cGGCUGGcgGCGggGCCGGGGcgggcuccucggacgGCGUCcccGGCu -3'
miRNA:   3'- -CUGGCC--UGCagCGGCCCC---------------UGCAG---CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.