miRNA display CGI


Results 41 - 60 of 354 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 133213 0.66 0.792818
Target:  5'- -uCgGGACGUCGUCcgcccagcgaggacgGGaGGGCGgCGGCg -3'
miRNA:   3'- cuGgCCUGCAGCGG---------------CC-CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 24585 0.66 0.78948
Target:  5'- -cCCGGucCGUCGaCgCGGGGACcgcuggGUCGGa -3'
miRNA:   3'- cuGGCCu-GCAGC-G-GCCCCUG------CAGCCg -5'
8946 5' -62.1 NC_002512.2 + 227909 0.66 0.78948
Target:  5'- aGGCCGGAgaCGgacgCGCCGccuccGACGcCGGCg -3'
miRNA:   3'- -CUGGCCU--GCa---GCGGCcc---CUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 166617 0.66 0.78948
Target:  5'- -cCCaGGGCuccgCGuCCGGGaACGUCGGCu -3'
miRNA:   3'- cuGG-CCUGca--GC-GGCCCcUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 117004 0.66 0.78948
Target:  5'- cGACC-GACGagaaCGCCGGgccggaGGACG-CGGCc -3'
miRNA:   3'- -CUGGcCUGCa---GCGGCC------CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 119561 0.66 0.78948
Target:  5'- gGACCGGGCGga-CCGcGGGAgccCGGCg -3'
miRNA:   3'- -CUGGCCUGCagcGGC-CCCUgcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 27959 0.66 0.78948
Target:  5'- -cCCGGGCccGUCGCCGauGGGCGgccgGGCg -3'
miRNA:   3'- cuGGCCUG--CAGCGGCc-CCUGCag--CCG- -5'
8946 5' -62.1 NC_002512.2 + 124337 0.66 0.78948
Target:  5'- aGCCuGAcCGUCaaCGGGGA-GUCGGCc -3'
miRNA:   3'- cUGGcCU-GCAGcgGCCCCUgCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 18842 0.66 0.78948
Target:  5'- cGAgCGGAgGUaGCgGGGGACGgcCGcGCa -3'
miRNA:   3'- -CUgGCCUgCAgCGgCCCCUGCa-GC-CG- -5'
8946 5' -62.1 NC_002512.2 + 208422 0.66 0.786964
Target:  5'- --aCGGGCGccgcucccggCGCCGGcccccgaucgagucGGACGUCGGg -3'
miRNA:   3'- cugGCCUGCa---------GCGGCC--------------CCUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 214411 0.66 0.784437
Target:  5'- gGGCCGGAgCG-CGCCGcgcccgaGGAccgcguccccgucuaCGUCGGCg -3'
miRNA:   3'- -CUGGCCU-GCaGCGGCc------CCU---------------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 142069 0.66 0.7819
Target:  5'- cGGCCGGGgGaUCGCuCGGGGgugcaaccgaacgcGgacccgguaccgaccCGUCGGCg -3'
miRNA:   3'- -CUGGCCUgC-AGCG-GCCCC--------------U---------------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 156959 0.66 0.781052
Target:  5'- -cCCGGcCGuUCGCC---GACGUCGGCa -3'
miRNA:   3'- cuGGCCuGC-AGCGGcccCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 137291 0.66 0.781052
Target:  5'- cGACCGGccuCGggacCGCCGccccucccGGccgcGGCGUCGGCg -3'
miRNA:   3'- -CUGGCCu--GCa---GCGGC--------CC----CUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 97863 0.66 0.781052
Target:  5'- uGGCCGacGACGUCGCCGccGAgGUcccccCGGCg -3'
miRNA:   3'- -CUGGC--CUGCAGCGGCccCUgCA-----GCCG- -5'
8946 5' -62.1 NC_002512.2 + 221683 0.66 0.781052
Target:  5'- gGACgCGGACaccCGCCcGGcGACGcUCGGCc -3'
miRNA:   3'- -CUG-GCCUGca-GCGGcCC-CUGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 202134 0.66 0.781052
Target:  5'- cGCCGGucuCGgccgcCGCCGcGGGGCGggUGGUc -3'
miRNA:   3'- cUGGCCu--GCa----GCGGC-CCCUGCa-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 151865 0.66 0.781052
Target:  5'- cGACCGGAUGaC-UCGuGGGCGcCGGCg -3'
miRNA:   3'- -CUGGCCUGCaGcGGCcCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 101887 0.66 0.781052
Target:  5'- --gCGGGCGaaaGCgCGGGGACGccgacgggggCGGCg -3'
miRNA:   3'- cugGCCUGCag-CG-GCCCCUGCa---------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 72864 0.66 0.780203
Target:  5'- -uCCGGgccGCGUCGCCGuugucgcGGGGC-UCGGg -3'
miRNA:   3'- cuGGCC---UGCAGCGGC-------CCCUGcAGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.