miRNA display CGI


Results 41 - 60 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 118601 0.78 0.210104
Target:  5'- -cCCGGGCGUCugGCCGcGGGACGUCGa- -3'
miRNA:   3'- cuGGCCUGCAG--CGGC-CCCUGCAGCcg -5'
8946 5' -62.1 NC_002512.2 + 95094 0.78 0.196257
Target:  5'- aGACCGG-CGUCGggcCCGGGGACG-CGGg -3'
miRNA:   3'- -CUGGCCuGCAGC---GGCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 121882 0.78 0.196257
Target:  5'- ---gGGAgGUCGCgGGGGACGcUCGGCg -3'
miRNA:   3'- cuggCCUgCAGCGgCCCCUGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 81842 0.79 0.183212
Target:  5'- uGCCGGACcggGUCGGGGAgCGUCGGCg -3'
miRNA:   3'- cUGGCCUGcagCGGCCCCU-GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 120634 0.79 0.174948
Target:  5'- cGGCgGGACGggaCGCCGGGGGCG-CGGa -3'
miRNA:   3'- -CUGgCCUGCa--GCGGCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 90064 0.74 0.36737
Target:  5'- cGACCauGACGuUCGCCGGGGGCGggUGGa -3'
miRNA:   3'- -CUGGc-CUGC-AGCGGCCCCUGCa-GCCg -5'
8946 5' -62.1 NC_002512.2 + 99886 0.74 0.36885
Target:  5'- gGACCGGgaggaggcGCGgcccgucgagggCGCCGGGGgcccgccgaagggcgGCGUCGGCu -3'
miRNA:   3'- -CUGGCC--------UGCa-----------GCGGCCCC---------------UGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 7030 0.72 0.429675
Target:  5'- uGCCGGGC-UCGUCGuucGGGACGaagCGGCa -3'
miRNA:   3'- cUGGCCUGcAGCGGC---CCCUGCa--GCCG- -5'
8946 5' -62.1 NC_002512.2 + 80640 0.73 0.42155
Target:  5'- cGGCCGuccgcGGCGgcggCGCCGGGucCGUCGGUc -3'
miRNA:   3'- -CUGGC-----CUGCa---GCGGCCCcuGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 100290 0.73 0.42155
Target:  5'- aGCgGGGCGaguUCGUCGGGGGCGaCGGg -3'
miRNA:   3'- cUGgCCUGC---AGCGGCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 67971 0.73 0.413518
Target:  5'- cGCCGuGGCGUcCGCCGGaGGAgGgcCGGCg -3'
miRNA:   3'- cUGGC-CUGCA-GCGGCC-CCUgCa-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 20777 0.73 0.413518
Target:  5'- -cCCGGACGUCGggacaCGGGGugacgacccggACGUCGGg -3'
miRNA:   3'- cuGGCCUGCAGCg----GCCCC-----------UGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 169341 0.73 0.405581
Target:  5'- gGGCCGGACGUgGgaGGGGAC--UGGCa -3'
miRNA:   3'- -CUGGCCUGCAgCggCCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 103313 0.73 0.400865
Target:  5'- aGAuCCGGGCGuUCGCCaggacgaccgagcguGGGGGCGUCGa- -3'
miRNA:   3'- -CU-GGCCUGC-AGCGG---------------CCCCUGCAGCcg -5'
8946 5' -62.1 NC_002512.2 + 106016 0.73 0.39774
Target:  5'- --aCGGGCGgcgcCGCCGGGGGUG-CGGCg -3'
miRNA:   3'- cugGCCUGCa---GCGGCCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 100046 0.73 0.39774
Target:  5'- cGCCGGGCGcugagaCG-CGGGGGCGgCGGCg -3'
miRNA:   3'- cUGGCCUGCa-----GCgGCCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 32567 0.73 0.39774
Target:  5'- cGCCGGGCGccgcgggUGCCGGGGucgUGUCGGa -3'
miRNA:   3'- cUGGCCUGCa------GCGGCCCCu--GCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 81973 0.73 0.389998
Target:  5'- -cCCGGGCGggugguggCGgCGGGGGCGUCucgggGGCg -3'
miRNA:   3'- cuGGCCUGCa-------GCgGCCCCUGCAG-----CCG- -5'
8946 5' -62.1 NC_002512.2 + 91994 0.73 0.389229
Target:  5'- -uCCGGgucucccGCGUCGCCGGcggcggacucgcGGGCGUCGGg -3'
miRNA:   3'- cuGGCC-------UGCAGCGGCC------------CCUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 106620 0.73 0.381596
Target:  5'- -uCUGGAUGUcCGCCGGGGgguagcgGCGcCGGCu -3'
miRNA:   3'- cuGGCCUGCA-GCGGCCCC-------UGCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.