Results 21 - 40 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 5' | -62.1 | NC_002512.2 | + | 24585 | 0.66 | 0.78948 |
Target: 5'- -cCCGGucCGUCGaCgCGGGGACcgcuggGUCGGa -3' miRNA: 3'- cuGGCCu-GCAGC-G-GCCCCUG------CAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 131870 | 0.66 | 0.763866 |
Target: 5'- gGGCCGGAgaCGgggaGCCggagggggagaGGGGGgGUCGGUc -3' miRNA: 3'- -CUGGCCU--GCag--CGG-----------CCCCUgCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 29738 | 0.66 | 0.772512 |
Target: 5'- uACCGuGGCGgcgCGCgaGGGGGCc-CGGCg -3' miRNA: 3'- cUGGC-CUGCa--GCGg-CCCCUGcaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 57875 | 0.66 | 0.772512 |
Target: 5'- cGGCCGGACcggCGaCGGcGGCGaCGGCg -3' miRNA: 3'- -CUGGCCUGca-GCgGCCcCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 8141 | 0.66 | 0.775941 |
Target: 5'- uGCCGuucGACGgcgcguccgccaggCGCuCGGGGAUcUCGGCg -3' miRNA: 3'- cUGGC---CUGCa-------------GCG-GCCCCUGcAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 135802 | 0.66 | 0.780203 |
Target: 5'- gGACCGGcCGcCGCCgucgcggGGGGAgGagGGUc -3' miRNA: 3'- -CUGGCCuGCaGCGG-------CCCCUgCagCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 17858 | 0.66 | 0.762996 |
Target: 5'- -cCCGGGCGcggUGCUcgcgcagggcccgGGGGACGUgauaggCGGCg -3' miRNA: 3'- cuGGCCUGCa--GCGG-------------CCCCUGCA------GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 116705 | 0.66 | 0.772512 |
Target: 5'- gGAgCGGACGgcgaCGCCGGucGCGUcccgcccggccgCGGCg -3' miRNA: 3'- -CUgGCCUGCa---GCGGCCccUGCA------------GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 137028 | 0.66 | 0.779352 |
Target: 5'- gGACCugauauaggGGugGcCGaCCGGGGACGgccagggaggaGGCg -3' miRNA: 3'- -CUGG---------CCugCaGC-GGCCCCUGCag---------CCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 18842 | 0.66 | 0.78948 |
Target: 5'- cGAgCGGAgGUaGCgGGGGACGgcCGcGCa -3' miRNA: 3'- -CUgGCCUgCAgCGgCCCCUGCa-GC-CG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 72864 | 0.66 | 0.780203 |
Target: 5'- -uCCGGgccGCGUCGCCGuugucgcGGGGC-UCGGg -3' miRNA: 3'- cuGGCC---UGCAGCGGC-------CCCUGcAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 89486 | 0.66 | 0.771652 |
Target: 5'- aGACCGcgaacguGACGUuuguguacCGCgCGGaGACGUCGGUg -3' miRNA: 3'- -CUGGC-------CUGCA--------GCG-GCCcCUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 43055 | 0.66 | 0.805159 |
Target: 5'- cGACgcgcaGGGCcUCGCCGaggcaccggucccGGGGCG-CGGCg -3' miRNA: 3'- -CUGg----CCUGcAGCGGC-------------CCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 137176 | 0.66 | 0.797788 |
Target: 5'- -cCCGGACGUcCGUaCGGcGuCGUCGGUc -3' miRNA: 3'- cuGGCCUGCA-GCG-GCCcCuGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 94059 | 0.66 | 0.772512 |
Target: 5'- cGACgaCGGGCG-CGgCGggaacGGGAcCGUCGGCg -3' miRNA: 3'- -CUG--GCCUGCaGCgGC-----CCCU-GCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 91839 | 0.66 | 0.772512 |
Target: 5'- -cCCGGAUccgGUC-CCGcaGGAUGUCGGCu -3' miRNA: 3'- cuGGCCUG---CAGcGGCc-CCUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 124337 | 0.66 | 0.78948 |
Target: 5'- aGCCuGAcCGUCaaCGGGGA-GUCGGCc -3' miRNA: 3'- cUGGcCU-GCAGcgGCCCCUgCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 104777 | 0.66 | 0.797788 |
Target: 5'- -gUCGGACGgcgCGUggCGGGGuccGCGcgCGGCg -3' miRNA: 3'- cuGGCCUGCa--GCG--GCCCC---UGCa-GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 43538 | 0.66 | 0.797788 |
Target: 5'- cGGCCccgaaGACGUUGUCGcGGAUGaCGGCg -3' miRNA: 3'- -CUGGc----CUGCAGCGGCcCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 97863 | 0.66 | 0.781052 |
Target: 5'- uGGCCGacGACGUCGCCGccGAgGUcccccCGGCg -3' miRNA: 3'- -CUGGC--CUGCAGCGGCccCUgCA-----GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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