miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 57875 0.66 0.772512
Target:  5'- cGGCCGGACcggCGaCGGcGGCGaCGGCg -3'
miRNA:   3'- -CUGGCCUGca-GCgGCCcCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 3189 0.66 0.763866
Target:  5'- cGCUcGACGcCGCCGcGGGCGaCGGCc -3'
miRNA:   3'- cUGGcCUGCaGCGGCcCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 72864 0.66 0.780203
Target:  5'- -uCCGGgccGCGUCGCCGuugucgcGGGGC-UCGGg -3'
miRNA:   3'- cuGGCC---UGCAGCGGC-------CCCUGcAGCCg -5'
8946 5' -62.1 NC_002512.2 + 89486 0.66 0.771652
Target:  5'- aGACCGcgaacguGACGUuuguguacCGCgCGGaGACGUCGGUg -3'
miRNA:   3'- -CUGGC-------CUGCA--------GCG-GCCcCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 86672 0.66 0.763866
Target:  5'- cGAgCGGACGgcgCGCgaGGGGGa--CGGCa -3'
miRNA:   3'- -CUgGCCUGCa--GCGg-CCCCUgcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 8141 0.66 0.775941
Target:  5'- uGCCGuucGACGgcgcguccgccaggCGCuCGGGGAUcUCGGCg -3'
miRNA:   3'- cUGGC---CUGCa-------------GCG-GCCCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 53691 0.66 0.772512
Target:  5'- aGGCUGG-CGUaCGCCGaGGAgcuggagaagcUGUCGGCc -3'
miRNA:   3'- -CUGGCCuGCA-GCGGCcCCU-----------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 90909 0.66 0.772512
Target:  5'- cGGCCGGACuGgcggcCGCgaaCGGGGcCGgcgCGGCc -3'
miRNA:   3'- -CUGGCCUG-Ca----GCG---GCCCCuGCa--GCCG- -5'
8946 5' -62.1 NC_002512.2 + 17858 0.66 0.762996
Target:  5'- -cCCGGGCGcggUGCUcgcgcagggcccgGGGGACGUgauaggCGGCg -3'
miRNA:   3'- cuGGCCUGCa--GCGG-------------CCCCUGCA------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 151865 0.66 0.781052
Target:  5'- cGACCGGAUGaC-UCGuGGGCGcCGGCg -3'
miRNA:   3'- -CUGGCCUGCaGcGGCcCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 137028 0.66 0.779352
Target:  5'- gGACCugauauaggGGugGcCGaCCGGGGACGgccagggaggaGGCg -3'
miRNA:   3'- -CUGG---------CCugCaGC-GGCCCCUGCag---------CCG- -5'
8946 5' -62.1 NC_002512.2 + 97863 0.66 0.781052
Target:  5'- uGGCCGacGACGUCGCCGccGAgGUcccccCGGCg -3'
miRNA:   3'- -CUGGC--CUGCAGCGGCccCUgCA-----GCCG- -5'
8946 5' -62.1 NC_002512.2 + 94059 0.66 0.772512
Target:  5'- cGACgaCGGGCG-CGgCGggaacGGGAcCGUCGGCg -3'
miRNA:   3'- -CUG--GCCUGCaGCgGC-----CCCU-GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 131870 0.66 0.763866
Target:  5'- gGGCCGGAgaCGgggaGCCggagggggagaGGGGGgGUCGGUc -3'
miRNA:   3'- -CUGGCCU--GCag--CGG-----------CCCCUgCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 134920 0.66 0.775941
Target:  5'- gGACCGGcgcgGCGUCugucggaucuuccuCCGGGGGCucCGGCu -3'
miRNA:   3'- -CUGGCC----UGCAGc-------------GGCCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 62296 0.66 0.772512
Target:  5'- -cCCGGGCGUCGCagaggCGGcGGAUGacCGGg -3'
miRNA:   3'- cuGGCCUGCAGCG-----GCC-CCUGCa-GCCg -5'
8946 5' -62.1 NC_002512.2 + 116705 0.66 0.772512
Target:  5'- gGAgCGGACGgcgaCGCCGGucGCGUcccgcccggccgCGGCg -3'
miRNA:   3'- -CUgGCCUGCa---GCGGCCccUGCA------------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 29738 0.66 0.772512
Target:  5'- uACCGuGGCGgcgCGCgaGGGGGCc-CGGCg -3'
miRNA:   3'- cUGGC-CUGCa--GCGg-CCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 135802 0.66 0.780203
Target:  5'- gGACCGGcCGcCGCCgucgcggGGGGAgGagGGUc -3'
miRNA:   3'- -CUGGCCuGCaGCGG-------CCCCUgCagCCG- -5'
8946 5' -62.1 NC_002512.2 + 91839 0.66 0.772512
Target:  5'- -cCCGGAUccgGUC-CCGcaGGAUGUCGGCu -3'
miRNA:   3'- cuGGCCUG---CAGcGGCc-CCUGCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.